Transcript Information: S_Transcript_224276.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.87587092672746
Replicate 21.7315100665391
Replicate 31.4007141329317
Condition 2: 8 Hour
Replicate 11.6196498975038
Replicate 21.5292149703104
Replicate 31.7808176480111
Condition 3: 24 Hour
Replicate 11.2719805576802
Replicate 22.1803160503828
Replicate 31.1493589855496


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_224276.p1 GENE.S_Transcript_224276~~S_Transcript_224276.p1 ORF type:complete len:395 (+),score=56.69,UBN2_3|PF14244.2|1e-16,UBN2|PF14223.2|1.6e-12,Retrotrans_gag|PF03732.13|4.7e-08,DUF4219|PF13961.2|1.1e-06,DUF4219|PF13961.2|8.6e+03,DUF4219|PF13961.2|2.2e+03,zf-CCHC|PF00098.19|1.5e-05,UBN2_2|PF14227.2|1.8e-05 S_Transcript_224276:957-2141(+)
ATGGCTGATATTGCTAGTTCATCTAGCAGTATTGAGAAGCTTAACAACGGGAACTATAATACGTGGAGCACACGCATAAAGTTCTATTTGCTCGGACAAGACCTTTGGGGTATTGTCGGTGGTAATGAAACCACAAAACCAACCGACCCAAAAGAATTAAAGATATGGAAGATTAAAGCCGGGAAGACTATGTATGCGCTGTCCGCAACTGTCGAAGACGAGTTGCTACCCCGCATCAAGGATGCAAAGATACCAAAAGAGGCTTGGGACACCTTACAGCAGTTGTTCGCAAAGAAGAACGACGCTCAACTTCAACTACTCGAAAATGAGTTGTTGACGATCAGGCAGAACAAAATGACGGTGAATCAGTATTTCACCAAAGTTAAATCTTTGTGTGAAACAATCTCGAAATTGGATCCACAAAATCCAATTACAGAGACAAGGATGCGCAGGATCATCGTTCATGGCTTAAGATCAGAGTTTAACAGTCTTGTCACTGCAACTCGAGGTTGGGCTACAGAACCAACTCTAACAGATTTAGAAAATGTTTTAGCCAACCAAGAGGCTCTAGACAAACAAATGTCTGGAATTTCCATAAAAGATGAAGAAGACAAAGCTCTCTTTGGGAACAAGAGAGTCAAAGAAGGTGACGAGAAATTTGCCAGATCGAGAAATGGAGCCGGCAAGTCATGGAGAAAGCCAGGCTGGTCCAATAAGGGACAACAAAGGAGAGGCTTCCAGCGAGGGGGAGCCAAGCCAGGTCGTGGCCGTAATGAGAATGGTTATAAGAACCAAGCACTACAAGATGTTGTGTGCTACAAGTGCAAGAAGAAAGGGCATTATGCTCGAGATTGTTGGTCCAAATCAGCAGAAGGGAATGCCGCGACATTGGCAACACAAGAGAGCCAAAGTGAAACCGAGTGGGACCTACAAGCGTCCTTTGCAATGGAAGAAGAAACTAGTTCAATTGAGGAACTTGATTTTGACGGCCATCCAATGCCATCTTGCACCACCACACTAGAAGAAATAGCTCTTGCCGTCACAAATGGCAAGTCAATCAATTACAAAGATGATTGGATCATTGATTCCGGTTGGTCTAATCATATGATCGGAGATAAGGCAAAGTTCGTGAGCATGTCCGAATACAAGCACGGACGAGTGGTGGTGACAGCAAATAACTCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_224276.p1 GENE.S_Transcript_224276~~S_Transcript_224276.p1 ORF type:complete len:395 (+),score=56.69,UBN2_3|PF14244.2|1e-16,UBN2|PF14223.2|1.6e-12,Retrotrans_gag|PF03732.13|4.7e-08,DUF4219|PF13961.2|1.1e-06,DUF4219|PF13961.2|8.6e+03,DUF4219|PF13961.2|2.2e+03,zf-CCHC|PF00098.19|1.5e-05,UBN2_2|PF14227.2|1.8e-05 S_Transcript_224276:957-2141(+)
MADIASSSSSIEKLNNGNYNTWSTRIKFYLLGQDLWGIVGGNETTKPTDPKELKIWKIKAGKTMYALSATVEDELLPRIKDAKIPKEAWDTLQQLFAKKNDAQLQLLENELLTIRQNKMTVNQYFTKVKSLCETISKLDPQNPITETRMRRIIVHGLRSEFNSLVTATRGWATEPTLTDLENVLANQEALDKQMSGISIKDEEDKALFGNKRVKEGDEKFARSRNGAGKSWRKPGWSNKGQQRRGFQRGGAKPGRGRNENGYKNQALQDVVCYKCKKKGHYARDCWSKSAEGNAATLATQESQSETEWDLQASFAMEEETSSIEELDFDGHPMPSCTTTLEEIALAVTNGKSINYKDDWIIDSGWSNHMIGDKAKFVSMSEYKHGRVVVTANNS*

Click here to download the sequence:
Link to NCBI Protein BLAST