Transcript Information: S_Transcript_224279.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value6E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.40894682749095
Replicate 20.2347105272076
Replicate 30.26159909338441
Condition 2: 8 Hour
Replicate 10.27728048875705
Replicate 20.18510985872114
Replicate 30.22676433622321
Condition 3: 24 Hour
Replicate 10.23239237755951
Replicate 20.16073625231452
Replicate 30.44719936888504


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_224279.p1 GENE.S_Transcript_224279~~S_Transcript_224279.p1 ORF type:3prime_partial len:846 (-),score=147.22,rve|PF00665.22|5.4e-22,gag_pre-integrs|PF13976.2|2.4e-13,UBN2|PF14223.2|1.4e-12,Retrotrans_gag|PF03732.13|1.5e-07,Retrotrans_gag|PF03732.13|6.2e+03,UBN2_3|PF14244.2|2.7e-07,UBN2_2|PF14227.2|7.3e-06 S_Transcript_224279:1-2535(-)
ATGTATGTGTTTTCCGCAACTGTTGAAGACGAGTTGCTACCCCGCATCAAGGATGCAAAGACACCAAAAGAGGCTTGGGACACCTTACAGCAGTTGTTCGCAAAGAAGAACGACGCTCAACTTCAACTACTCGAAAATGAGTTGTTGACGATCAGGCAGAACAAAATGACGGTGAATCAGTATTTCACCAAAGTTAAATCTTTGTGTGAAACAATCTCTAAATTGGATCCACAAAATCCAATTACAGAGACAAGGATGCGCAGGATCATCGTTCATGGATTAAGATCAGAGTTTAATAGTCTTGTCACTGCAACTCGAGGTTGGGCTACAGAACCAACTCTAACAGATTTGGAAAATGTACTTGCCAACCAAGAGGCTCTAGATAAACAAATGTCTGGAGTTTCCATAAGAGATGAAGAAGACAAAGCTCTCTTTGGAAATAAGAGAGTCAAAGAAGGTGATGAGAAATCTGCTAGATCGAGAAATGGAGCCGGCAAGTCATGGAGAAAGCCAGGCTGGTCCAATAAGGGACAACAAAGGAGAGGCTTCCAGCGAGGGGGAGCCAGGCCAAGTCGAGGCCGTGATGTGAATGGTTATAAGAACCAAGCACTACAAGATGTTGTGTGCTACAAATGCAAGAAAAAGGGGCACTATGCTCGAGATTGTTGGTCCAAATCAGTAGAAGGGAATACTGCGACATCGGCAACAAAGGAGAGCCAAAGTGAAACCGAGTGGGACTTACAAGCGTCCTTTGTGGTGGAAGAAGAAACTAGTTCAATTGAGGAATTAGATTTTGATGGCCAGTCAGTGCCATCTTGCACCACCACACAAGAAGAAATAGCTCTTGCTGTCACAAATGGCAACTCAATCAATTACAAAGATGATTGGATCATTGATTCCGGTTGCTCTAATCATATGACCGGAGATAAGGCAAAGTTCGTGAGCATGTCCGAATACAAGCACGGACGAGTGGTGGTGACAGCAAATAACTCGGAGTTGCCAATTACTCATATTGGCAAGGCATCGGTGACACCTCGTTACAACAACAAGCAAATCCAGCTGGAGAATGTCTACCACGTTCCTGGTATGACAAAGAATTTGATGTCAGTTTCACAATTGACAGCATCCGGAAACCATGTAGTTTTCGGACCACATGATGTGAAGGTGTATCACAATTTGGAGGATGTATCATCTCCCATCATACAAGGGAGACAATTGGAATCAGTCTACGTGATGTCGGCACAGACGACATATGTAGACAAAGCAAGGAGAAATGAGACGGCTGATTTATGGCATGCACGTTTGGGGCACGTGAGTTATAACAAGCTTAAGGCAATGATGAAAAAGTCAATGCTCAAGGGTCTTCCTCAGTTAGATGTCAAAGAAGACATTGTTTGTGCTGGATGTCAATTTGGAAAAGCACACCAACTGCCATATGAAGAGTCGAAGTTCCATGCCAAGATGCCATTGGAATTAGTTCACTCTGATGTGTTCGGTCCAGTGAAGCAGGAATCGATCAGTGGCTCGCGCTACTTGATCACTTTCATTGATGACTTTTCAAGATATGTTTGGATCGATTTCATGAAGGAGAAGTCTGAAGCACTCATCAAATTCAAGAAGTTCAAGGAGATGGTGGAAAAAGAAGTTGGCAACAAGATTAGATGTTTGTGTACGGACAACGGGGGAGAGTACACATCTGCAGAGTTTTCCAAGTACTTGCAAGATTGCAAGATTCGGCGTCAATTAACTTGTCCCAACACTCCACAACAAAATGGAGTGGCAGAAAGAAAAAATCGCCACCTTGCTGAAACATGTAGAAGCATGTTACATGCCAAAAACGTCCCACCACGTTTTTGGGCAGAATGTATGAAAACAGCAGCACACGTGACAAACAGATTGCCACAGGCGAGATTGGGATTTATCTCACCTTTCGAGAAGCTGTGGAAAATGAAGCCAACTGTTAGTCACTTTCGAGTATTTGGGTGTGTATGCTACGTGTTTGTTCCTGACCACTTACGTAGCAAGTTTGACAAGAAGGCTATCCGTTGTATCTTTGTGGGGTACGACGATCAACGAAAGGGCTTGAAATGTTGTGATCCAACAACAAATCGGTGCCATGTTTCGCGAAATGTTGTATTTGATGAAGCGTCATCATGGTGGTCACCGCAAGCTATGTTACTGCCAGACTCAAAGGAGATTGAAGAAAAGCTTCAAGAGAAGATGGTCAAGCAAGATGATGGTCAATCTAGTCAAGAAGGTGATGTTCCTGATACTGGAGAGATTCCAACAAGATCTCCAGATAAAGGGAAAAGTCCATGGCAAACTGGAGCACATCAAGTCACTCCGGAAGAAGAAAGGCCCAACCAAATTGAAATTGAAGATGAAAAGGAAGAATCCACGCCGCAACTCCGAAGGTCCACCAGAATCAGGTACCCAAATCGGAAGTATGCAACCCATGCAAATGCTGCAATACTGGAAGTCAAGGAACCAACCACATTTGATGAAGCAGCTGAGAATAAAGAATGGAGAAAGGCG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_224279.p1 GENE.S_Transcript_224279~~S_Transcript_224279.p1 ORF type:3prime_partial len:846 (-),score=147.22,rve|PF00665.22|5.4e-22,gag_pre-integrs|PF13976.2|2.4e-13,UBN2|PF14223.2|1.4e-12,Retrotrans_gag|PF03732.13|1.5e-07,Retrotrans_gag|PF03732.13|6.2e+03,UBN2_3|PF14244.2|2.7e-07,UBN2_2|PF14227.2|7.3e-06 S_Transcript_224279:1-2535(-)
MYVFSATVEDELLPRIKDAKTPKEAWDTLQQLFAKKNDAQLQLLENELLTIRQNKMTVNQYFTKVKSLCETISKLDPQNPITETRMRRIIVHGLRSEFNSLVTATRGWATEPTLTDLENVLANQEALDKQMSGVSIRDEEDKALFGNKRVKEGDEKSARSRNGAGKSWRKPGWSNKGQQRRGFQRGGARPSRGRDVNGYKNQALQDVVCYKCKKKGHYARDCWSKSVEGNTATSATKESQSETEWDLQASFVVEEETSSIEELDFDGQSVPSCTTTQEEIALAVTNGNSINYKDDWIIDSGCSNHMTGDKAKFVSMSEYKHGRVVVTANNSELPITHIGKASVTPRYNNKQIQLENVYHVPGMTKNLMSVSQLTASGNHVVFGPHDVKVYHNLEDVSSPIIQGRQLESVYVMSAQTTYVDKARRNETADLWHARLGHVSYNKLKAMMKKSMLKGLPQLDVKEDIVCAGCQFGKAHQLPYEESKFHAKMPLELVHSDVFGPVKQESISGSRYLITFIDDFSRYVWIDFMKEKSEALIKFKKFKEMVEKEVGNKIRCLCTDNGGEYTSAEFSKYLQDCKIRRQLTCPNTPQQNGVAERKNRHLAETCRSMLHAKNVPPRFWAECMKTAAHVTNRLPQARLGFISPFEKLWKMKPTVSHFRVFGCVCYVFVPDHLRSKFDKKAIRCIFVGYDDQRKGLKCCDPTTNRCHVSRNVVFDEASSWWSPQAMLLPDSKEIEEKLQEKMVKQDDGQSSQEGDVPDTGEIPTRSPDKGKSPWQTGAHQVTPEEERPNQIEIEDEKEESTPQLRRSTRIRYPNRKYATHANAAILEVKEPTTFDEAAENKEWRKA

Click here to download the sequence:
Link to NCBI Protein BLAST