Transcript Information: S_Transcript_224713.p1


Annotated TAIR IDAT1G56570.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21195804-21197721 | Forward length=611
E-Value2.5E-255
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.5304917189737
Replicate 20.7329830417779
Replicate 30.88843745253225
Condition 2: 8 Hour
Replicate 11.9837572388031
Replicate 22.0439396597757
Replicate 33.0097127017
Condition 3: 24 Hour
Replicate 10.32658463690257
Replicate 20.56471291303191
Replicate 30.37707375356486


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_224713.p1 GENE.S_Transcript_224713~~S_Transcript_224713.p1 ORF type:complete len:602 (+),score=100.01,PPR_2|PF13041.2|0.0035,PPR_2|PF13041.2|1e-10,PPR_2|PF13041.2|74,PPR_2|PF13041.2|7.3e-06,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|8.6e-09,PPR_2|PF13041.2|0.068,PPR_2|PF13041.2|3.8e-08,PPR_2|PF13041.2|0.0049,PPR_2|PF13041.2|1.8,PPR_2|PF13041.2|1.3e+04,PPR_2|PF13041.2|7.7e+03,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.00026,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.0036,PPR|PF01535.16|1e+03,PPR|PF01535.16|0.012,PPR|PF01535.16|0.039,PPR|PF01535.16|7.1e+02,PPR|PF01535.16|0.007,PPR|PF01535.16|6.1e-08,PPR|PF01535.16|0.033,PPR|PF01535.16|0.32,PPR|PF01535.16|1.2e+02,PPR_1|PF12854.3|0.001,PPR_1|PF12854.3|12,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|36,PPR_1|PF12854.3|1.1e+04,PPR_1|PF12854.3|5.3,PPR_1|PF12854.3|0.58,PPR_1|PF12854.3|5,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|9.5,PPR_1|PF12854.3|0.18,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|0.71,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|0.42,PPR_3|PF13812.2|2e+03,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|0.57,PPR_3|PF13812.2|35,PPR_3|PF13812.2|7.3,PPR_3|PF13812.2|12,PPR_3|PF13812.2|2.6e+03,DYW_deaminase|PF14432.2|1.7e+03,DYW_deaminase|PF14432.2|4.4e-08 S_Transcript_224713:218-2023(+)
ATGAACGCTGTCAAACTATCAACCCCTTTCATTCGCACAATCCCATTAATGATTCTAAATGCACTTCATTGCACCAAACCAAGCCCACCATTTTCACCAAGAAACCCTTCAATTTTAGCCACTAACCTCATCAAGTCGTACTTTGAAAAGGGGTCTGTCAAGGAAGCACGACAGGTGTTCGACGAAATGCCTGACAGAGATGTTGTTGCTTGGACTGCCATGATTGCTGGTTATGCATCCTGCAACTACGAATCCCTTGCTTGGATGATGTTTCATGAGATGTTAATGGAAGGGGTCAAGCCAAATGCATTCACTGTTTCAAGTGTGTTGAAGGTTTGTAAAGGAATGAAGTGCTATTATTGTGGAGCTTCAGTTCATGGGCTTGCTATTAAGCTTGGTTTGGTGGGTTCCATTTATGTGGATAATGCTTTGATAGATGTTTATGCTGCATGCTGTAGTAGTATGGACCAAGCATGCATGGTTTTCCGTGATGTTGATCGAAAAAGCGATGTTTCTTGGACTACTTTGATTACAGGATACACTCATCGAGGTGATGGTTACAGTGGACTAGAAGCTTTTCGTCAAATGTTAGCTGAGGAAGCTGAGCCAAGCACCTTCAGTTTCTCAATCGCCATTAAAGCGTGTTCGTTAACTGGACTGAGTGTACATGGTAAGCAATTACACGCTGCTATTATTAAATATGGACTTCAAGCCAGTCCACCTGTTATGAATTCCATTGTAGATATGTATTGTTGGTGTGAGAGTCTATCTGAAGCTAGGCAATGTTTCCATGAGATGCAACTGAAGGACTTGATCACATGGAACACTTTAATTGCTGGCTACAAAAGGTCCAATTCTAGCGAGTGCCTGTCTATGTTCCTGTCAATGGAGTCAGAAGGCTTTACTCCAAATAGCTTCACATTTACAAGTGTTATAGCAGCTTGTGCTGATTTAGCTCTCTTAAATTGTGGACAGCAAATTCATGCAGGAATTCTTAAAAGAGGGCTAGATAGGAACATAGCATCGGCAAACTCCCTCATAGACATGTATGCTAAATGTGGAAGTATTAGGGATTCCAGTAAACTATTTACAGAGATGGCTTTTAGAGACTTAGTTTCATGGACTTCTATGATGATTGGCTTTGGGGCTCATGGTTATGGAAAGGAAGCTGTTGAGTTGTTTGATAAAATGGTCAAATCAGGCATCATACCTGATAGAGTTGTGTTCATGGCTGTTCTAAGTGCTTGCAGCCATGCGGGCCTTGTAAATGAAGGCCTGAGGTATTTTGACTCTATGGTCACAGAGTATAAGATCAGTCCTGATCAGGATATTTACGGATGTGTAGTGGATTTGCTTGGCCGTGCTGGAAAGGTTGAAGCAGCTTATGCTCTGATAAAAAATATGCCAGTGGATCCTGATGACTGTGTTTGGGGGGCACTTTTAGGATCCTGTAAAGCACATATGCTTCCAGATTTGGGCAAGTTGGCAGCCCAATTTGTATCAGATGCAAGGCCAGACATGGTGAGGACATACCTTATGTTATCAAATCTGTATGCGTCAGAAGGTGAGTGGGAAAATTTTGCAAGGATGAGGAATTTGATGAAAGGATTAGGGGGGAAGAAAGAACCTGGGTGTAGTTGGATTGAGCTGAAAAACGATGTCTACAGCTTTGTTGTCGGAGATAGGGTAGGACCTGAAATGGATAGGGTCTATGAGGCATTGAATATTTTAATTAGACATACGAAAGAAGCAGGTTATGTTCCTGATATGGACTATCTCCTGCATGATCTGGAAGACAGGACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_224713.p1 GENE.S_Transcript_224713~~S_Transcript_224713.p1 ORF type:complete len:602 (+),score=100.01,PPR_2|PF13041.2|0.0035,PPR_2|PF13041.2|1e-10,PPR_2|PF13041.2|74,PPR_2|PF13041.2|7.3e-06,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|8.6e-09,PPR_2|PF13041.2|0.068,PPR_2|PF13041.2|3.8e-08,PPR_2|PF13041.2|0.0049,PPR_2|PF13041.2|1.8,PPR_2|PF13041.2|1.3e+04,PPR_2|PF13041.2|7.7e+03,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.00026,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.0036,PPR|PF01535.16|1e+03,PPR|PF01535.16|0.012,PPR|PF01535.16|0.039,PPR|PF01535.16|7.1e+02,PPR|PF01535.16|0.007,PPR|PF01535.16|6.1e-08,PPR|PF01535.16|0.033,PPR|PF01535.16|0.32,PPR|PF01535.16|1.2e+02,PPR_1|PF12854.3|0.001,PPR_1|PF12854.3|12,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|36,PPR_1|PF12854.3|1.1e+04,PPR_1|PF12854.3|5.3,PPR_1|PF12854.3|0.58,PPR_1|PF12854.3|5,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|9.5,PPR_1|PF12854.3|0.18,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|0.71,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|0.42,PPR_3|PF13812.2|2e+03,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|0.57,PPR_3|PF13812.2|35,PPR_3|PF13812.2|7.3,PPR_3|PF13812.2|12,PPR_3|PF13812.2|2.6e+03,DYW_deaminase|PF14432.2|1.7e+03,DYW_deaminase|PF14432.2|4.4e-08 S_Transcript_224713:218-2023(+)
MNAVKLSTPFIRTIPLMILNALHCTKPSPPFSPRNPSILATNLIKSYFEKGSVKEARQVFDEMPDRDVVAWTAMIAGYASCNYESLAWMMFHEMLMEGVKPNAFTVSSVLKVCKGMKCYYCGASVHGLAIKLGLVGSIYVDNALIDVYAACCSSMDQACMVFRDVDRKSDVSWTTLITGYTHRGDGYSGLEAFRQMLAEEAEPSTFSFSIAIKACSLTGLSVHGKQLHAAIIKYGLQASPPVMNSIVDMYCWCESLSEARQCFHEMQLKDLITWNTLIAGYKRSNSSECLSMFLSMESEGFTPNSFTFTSVIAACADLALLNCGQQIHAGILKRGLDRNIASANSLIDMYAKCGSIRDSSKLFTEMAFRDLVSWTSMMIGFGAHGYGKEAVELFDKMVKSGIIPDRVVFMAVLSACSHAGLVNEGLRYFDSMVTEYKISPDQDIYGCVVDLLGRAGKVEAAYALIKNMPVDPDDCVWGALLGSCKAHMLPDLGKLAAQFVSDARPDMVRTYLMLSNLYASEGEWENFARMRNLMKGLGGKKEPGCSWIELKNDVYSFVVGDRVGPEMDRVYEALNILIRHTKEAGYVPDMDYLLHDLEDRT*

Click here to download the sequence:
Link to NCBI Protein BLAST