Transcript Information: S_Transcript_22488.p2


Annotated TAIR IDAT5G49980.1
Annotated Gene Nameauxin F-box protein 5
Annotated Gene Symbol(s)AFB5
Annotation TypeOrtholog
Chromosome Positionchr5:20334420-20336531 | Reverse length=619
E-Value2.8e-311
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 134.829095576243
Replicate 236.388795528586
Replicate 333.791053361228
Condition 2: 8 Hour
Replicate 134.313841131092
Replicate 233.858066229922
Replicate 334.691899625557
Condition 3: 24 Hour
Replicate 129.688516153324
Replicate 229.394507296169
Replicate 330.681178177364


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_22488.p2 GENE.S_Transcript_22488~~S_Transcript_22488.p2 ORF type:complete len:596 (+),score=90.35,LRR_6|PF13516.2|87,LRR_6|PF13516.2|38,LRR_6|PF13516.2|1.5e+04,LRR_6|PF13516.2|8.9e+03,LRR_6|PF13516.2|1.8e+02,LRR_6|PF13516.2|1.7e+02,LRR_6|PF13516.2|1.6e+03,LRR_6|PF13516.2|1.8e+03,LRR_6|PF13516.2|3.4e+02 S_Transcript_22488:475-2262(+)
ATGAGAGAGAACAACATCGCTGCCGCCGTCCACGGCAGTGATGGGTTCAGCTACGACCCCCCATGTGCCGATCAAGTCCTAGAGAACGTTCTAGAAAACGTCCTCCAGTTCCTCACGTGCCGGAAAGATAGGAACTCAGCCTCCCTCGTGTGCAAGTTCTGGTACCGTGCGGAAGCCCTCACACGATCCGACCTCTTCATCGGCAACTGCTACGTCATCTCCCCACGTCGGACTACCGAGCGTTTCCGCCGAGTCAGATCGGTTGTTCTTAAAGGTAAACCCCGCTTCGCTGATTTCCAACTCATGCCACCTAACTGGGGGGCCCACTGTACTCGCTGGTTCACCTCTTTTGCTGATGCTTATCCTTGGCTCGAACGGATTTACCTCAAGCGTATGTTCCTCACTAATGATGATCTCGCACTCCTCGCTTCTTCTTTTCCTTCCTTGAAGGAACTCACTCTCGTTTGCTGTGAGGAGTTCGGCACTTATGGACTCTCTCTTATCGCCTCCAAGTGCAGACAGTTGAGAGTGTTGGATCTATTTGAGGATGAAGTGTTAGATGATGGAGTGGATTGGATATCTTGCTTTTCTGAAACTGGGTCTTGTCTCGAATCGCTTACTTTTGATTGTGTTGAATGCCCCATTAATTTTGGTGCCTTGGAGAAGCTCTTAATGAGGTCTCCTAATTTGAAGAAGCTTAGGGTTAATCGTTTTGTTTCGGTTGACCAGTTGCATCGTCTTATGATTCGAGCTCCCCAGTTAACTCATCTGGGTACTGGTTCTTTTAGTCCTTCTTCTGATGTCAGGCAGGAGACTGAACAGGAAATGGATTACCGAGCTGCATTTGCTGCTTGTAAATCTCTTGTTTGTCTTTCCGGTTTTCGAGAAACTGTTCCTGAACTTCTCCCTGCTATCTATCCTGCTTGTGCCAACCTCACTTCCTTGAATTTTAGCTATGCCAATATCAACGCCGAGCAGCTCAGATCCGTTATTTGCCATTGCCACAAACTCCAGACTTTTTGGGTTCTTGATACGGTGGGGGATGAAGGCCTCCAAGCTGTGGCTGCAACCTGTAAAGATCTTCAAGAGCTTCGTGTTTTCCCCTTTGATGCTCGCGAGGATAGTGAGGGATTCGTGTCTGAGGTTGGACTGCTGGCTATTTCTGAAGGGTGTAGGAAGTTGCGATCCATTTTATATTTCTGCCAGCAGATGACGAATGCTGCTGTCACTGCTATGTCCAAGAATTGTCCGGATCTTGTGGTTTTCCGGCTCTGTATCATGGCTCGCCACCTCCCTGATCATGTCACCAATGAGCCTATGGATGAAGGGTTTGGAGACATTGTTAAGAACTGCAAGAAACTCACGCGTCTTGCGATTTCTGGGTTGTTGACTGATAAGGCCTTCAGATATATCGGTGAGCATGGGAAATTGGTTCGCACCCTGTCTGTTGCTTTTGCTGGGGATACAGACATGGCGTTGAAGTATGTGCTCAAGGGTTGCCCCAATTTGCAGAAGCTTGAGGTGAGGGATAGCCCCTTTGGTGACTCGGTATTGCAAGCTGGTTTGCACCACTTTTACAACATGAGGTTCCTATGGATGTCTGCTTGTAGGCTGACCCTTCCAGCTTGCAGGGAGATTGCAAGACAAATGCCCCATTTGGTAGTCGAGGTGTTTAAAAATTCCGAGGAAGCAGTTGATGACAAGGATCCATATGTTGATACATTGTATATGTACCGGTCCCTTGAGGGGCCACGGAATGATGCACCAGAGTATGTGAGAATTCTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_22488.p2 GENE.S_Transcript_22488~~S_Transcript_22488.p2 ORF type:complete len:596 (+),score=90.35,LRR_6|PF13516.2|87,LRR_6|PF13516.2|38,LRR_6|PF13516.2|1.5e+04,LRR_6|PF13516.2|8.9e+03,LRR_6|PF13516.2|1.8e+02,LRR_6|PF13516.2|1.7e+02,LRR_6|PF13516.2|1.6e+03,LRR_6|PF13516.2|1.8e+03,LRR_6|PF13516.2|3.4e+02 S_Transcript_22488:475-2262(+)
MRENNIAAAVHGSDGFSYDPPCADQVLENVLENVLQFLTCRKDRNSASLVCKFWYRAEALTRSDLFIGNCYVISPRRTTERFRRVRSVVLKGKPRFADFQLMPPNWGAHCTRWFTSFADAYPWLERIYLKRMFLTNDDLALLASSFPSLKELTLVCCEEFGTYGLSLIASKCRQLRVLDLFEDEVLDDGVDWISCFSETGSCLESLTFDCVECPINFGALEKLLMRSPNLKKLRVNRFVSVDQLHRLMIRAPQLTHLGTGSFSPSSDVRQETEQEMDYRAAFAACKSLVCLSGFRETVPELLPAIYPACANLTSLNFSYANINAEQLRSVICHCHKLQTFWVLDTVGDEGLQAVAATCKDLQELRVFPFDAREDSEGFVSEVGLLAISEGCRKLRSILYFCQQMTNAAVTAMSKNCPDLVVFRLCIMARHLPDHVTNEPMDEGFGDIVKNCKKLTRLAISGLLTDKAFRYIGEHGKLVRTLSVAFAGDTDMALKYVLKGCPNLQKLEVRDSPFGDSVLQAGLHHFYNMRFLWMSACRLTLPACREIARQMPHLVVEVFKNSEEAVDDKDPYVDTLYMYRSLEGPRNDAPEYVRIL*

Click here to download the sequence:
Link to NCBI Protein BLAST