Transcript Information: S_Transcript_224968.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2450526893652
Replicate 21.6772880950158
Replicate 31.6177838669825
Condition 2: 8 Hour
Replicate 11.2470988489551
Replicate 21.5699542905071
Replicate 31.3711948751742
Condition 3: 24 Hour
Replicate 11.0219828533611
Replicate 23.31342274508
Replicate 31.4749733570243


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_224968.p1 GENE.S_Transcript_224968~~S_Transcript_224968.p1 ORF type:internal len:171 (+),score=8.15,UBN2_3|PF14244.2|1e-12 S_Transcript_224968:2-511(+)
TGGGATACCGTCGTCCGCTCCGTTTTCGGCTCATATCGGTACTGGCCCTCTTGGGCCCCCTTATCTGGTGGTGTTGGTTCTCATTTTTCTGGGCATGCTTTTCCCCCTGTTTCCGCGCCTAATGTCACCAATATCATGACGACAATGCTGCACTCTGTAGACGATTTTCTCTCATGGCGAACCCAATTTTCAGCGTTCTTAATCGCTCAAGGTCTTGTTGGTTATGTTGATGGTACCATCCCTCCTCCAATTGAATCTTTTGTGGACTCATATGGCGTAATAAGGTACAATCCTGAATATTCCGCTTGGCTTCGTTTGGATCAAAGTGTTCGTTGTTGGCTTTATGCAACTTTGTCAAAAGAATTGTTAGTAGAGTTTCATGATATTCAGCATTCCCATGATATATGGACTAAATTGCATACACGCTTCAATAATGACAGTTTAGCTCGTTCCATAGAATTAAAACGATCACTTACTATGCTTAAGAAATCTGACCAACAAACTATGGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_224968.p1 GENE.S_Transcript_224968~~S_Transcript_224968.p1 ORF type:internal len:171 (+),score=8.15,UBN2_3|PF14244.2|1e-12 S_Transcript_224968:2-511(+)
WDTVVRSVFGSYRYWPSWAPLSGGVGSHFSGHAFPPVSAPNVTNIMTTMLHSVDDFLSWRTQFSAFLIAQGLVGYVDGTIPPPIESFVDSYGVIRYNPEYSAWLRLDQSVRCWLYATLSKELLVEFHDIQHSHDIWTKLHTRFNNDSLARSIELKRSLTMLKKSDQQTME

Click here to download the sequence:
Link to NCBI Protein BLAST