Transcript Information: S_Transcript_224969.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value0.0005
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.25654406462226
Replicate 30.21445041957675
Condition 2: 8 Hour
Replicate 10
Replicate 20.26013777488054
Replicate 30
Condition 3: 24 Hour
Replicate 10.50802054629289
Replicate 20
Replicate 30.293279586106


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_224969.p1 GENE.S_Transcript_224969~~S_Transcript_224969.p1 ORF type:internal len:86 (+),score=9.07,UBN2_3|PF14244.2|1.8e-06 S_Transcript_224969:2-256(+)
TACTCCTCTTGGCTTCGTTTCGATCTAAGTGTTCGTTGTTGGTTGTATGCTACTTTCTCCAAAGAACTGTTAGTGAAGTTTCATGATGTTCAGCATTCCCATGATATATGGACTAAATTGCATAATCAATTCAATACTGATAGTTTGGCTCGTTCAATTGAATTAAAATGCTCTCTCACTATGGTCAAGAAAAATGAACAGCAAACTATGGAAGCATATTTACGTGATATTAAACGTATCGCTGAGGCATTAGCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_224969.p1 GENE.S_Transcript_224969~~S_Transcript_224969.p1 ORF type:internal len:86 (+),score=9.07,UBN2_3|PF14244.2|1.8e-06 S_Transcript_224969:2-256(+)
YSSWLRFDLSVRCWLYATFSKELLVKFHDVQHSHDIWTKLHNQFNTDSLARSIELKCSLTMVKKNEQQTMEAYLRDIKRIAEALA

Click here to download the sequence:
Link to NCBI Protein BLAST