Transcript Information: S_Transcript_225083.p1


Annotated TAIR IDAT3G62890.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:23246168-23247973 | Forward length=573
E-Value6E-109
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.80085420383645
Replicate 20.61285526548652
Replicate 30.68306429939261
Condition 2: 8 Hour
Replicate 11.6290228714477
Replicate 20.98394704665464
Replicate 31.8750051134011
Condition 3: 24 Hour
Replicate 10.50566859931931
Replicate 20.4721627411739
Replicate 31.1676872409776


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_225083.p1 GENE.S_Transcript_225083~~S_Transcript_225083.p1 ORF type:5prime_partial len:432 (+),score=96.11,DYW_deaminase|PF14432.2|2.1e-38,PPR_2|PF13041.2|97,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|7.3e-05,PPR_2|PF13041.2|3e-09,PPR_2|PF13041.2|0.023,PPR_2|PF13041.2|0.18,PPR_2|PF13041.2|1.2e+03,PPR_2|PF13041.2|7.6e+03,PPR_2|PF13041.2|3e+02,PPR|PF01535.16|65,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|5e-06,PPR|PF01535.16|8.3e-07,PPR|PF01535.16|1.6,PPR|PF01535.16|0.0096,PPR|PF01535.16|8.4e+03,PPR|PF01535.16|4.7e+02,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|0.0073,PPR_3|PF13812.2|3e+03,PPR_3|PF13812.2|0.00046,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|5.2,PPR_1|PF12854.3|25,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|5.9e+02,PPR_1|PF12854.3|0.0089,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|40,PPR_1|PF12854.3|4.8e-05,PPR_1|PF12854.3|1e+04,PPR_1|PF12854.3|1.4e+04 S_Transcript_225083:2-1297(+)
TGTTGTAGTTGTGGGGCTTGTGATGCACGCAAGGTGTTCGATGAAATGCCTGAGAGAAGTTCTGTGACTTGGAATGCTATGATTGGTGCTTGTGTGAGGATGGGTCAGCCTGGTATGGCTGTTGATTTGTTTAGGGGAATGCAGCAGGTTTCTGGGGTTTGCCCTGATGAGGTTACTATGGTTGCTGTTTTATCAGCTTGTACTGATCTTGGCGCGCTCGAGCTTGGGAAGTGGGTTGAGTCTTATATAGAGAGGGAAAGGGTTCGTAAAAGTGTGGAACTTTTTAACTCATTGATCAACATGTTTGTGAAGTGTGGCGATGCTGAGAAGGCATTGCGAGTTTTCAGAAGCATGGATGAAAGAAAACGAGACATTGTGTCTTGGACTTCTATTCTTGTTGGTTTAGGAATGCATGGGCGCGGAGAAGAAGCTATTGCCTTGTTTGAGGAAATGAAGGGAGCTGGTGTGAGCCCTGATCATGTTGCATTTATTGGGTTGCTAAATGCTTGTAGTCATGCTGGATTAGTTGATCAAGGATGGCTGTATTTCAGCTCAATGCTGAAGGATTATGGCTTATCACCCAAGGTAGAGCATTATGGTTGCATGGTAGACTTATTGTGCAGGGTTGGACTCTTCAAAGAAGCACTCGAGTTTGTCGAAACAATGCCAATCGGACCTAATTCAGTAATCATGCGAACCTTGATCAAATCATTTCATGGCCAAGGTGAGCTAAAACTTAGTGAAAGCATCACACAACGGTTGATTGGGAATGAGCCAATGCACGAGTCCAATTACGTGCTGCTTTCAAATGTGTATGCAAGAATGTCTCTTTGGCAGAAGAAATATGCCATTAGAGAAACTATGGATAAGAAGGGCTTGAAGAAACATCCTGGAAGTACTATGATTGAGCTGGGAAATGAAATTTATGAATTTGTCTCAGGAGATAGAACACACAATCAGTACGCAGAGATATATGAGATGTTAAATGAAATGTTGAAAGAGATCACAAAGGCTGGCTATAAGCCTGTTATGTCAGAGGTTTTGGTTGATGTTGATGAAGAGGACAAGGAAGATACACTAACTTGGCACAGTGAAAAGTTAGCAATTGCTTTTGCACTTCTTAAGACTCTGCCTGGCTCTCCTATCCGTATTGTGAAAAACTTGAGGGTTTGTGCTGATTGTCACATTGCAACTAAATTTATCTCCAAAGTATATAATAGAGAAATTTTAGTTAGGGACAAGAGCCGCTTTCACCATTTCAAAGATGGATTTTGTTCATGTAAAGATTTTTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_225083.p1 GENE.S_Transcript_225083~~S_Transcript_225083.p1 ORF type:5prime_partial len:432 (+),score=96.11,DYW_deaminase|PF14432.2|2.1e-38,PPR_2|PF13041.2|97,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|7.3e-05,PPR_2|PF13041.2|3e-09,PPR_2|PF13041.2|0.023,PPR_2|PF13041.2|0.18,PPR_2|PF13041.2|1.2e+03,PPR_2|PF13041.2|7.6e+03,PPR_2|PF13041.2|3e+02,PPR|PF01535.16|65,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|5e-06,PPR|PF01535.16|8.3e-07,PPR|PF01535.16|1.6,PPR|PF01535.16|0.0096,PPR|PF01535.16|8.4e+03,PPR|PF01535.16|4.7e+02,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|0.0073,PPR_3|PF13812.2|3e+03,PPR_3|PF13812.2|0.00046,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|5.2,PPR_1|PF12854.3|25,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|5.9e+02,PPR_1|PF12854.3|0.0089,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|40,PPR_1|PF12854.3|4.8e-05,PPR_1|PF12854.3|1e+04,PPR_1|PF12854.3|1.4e+04 S_Transcript_225083:2-1297(+)
CCSCGACDARKVFDEMPERSSVTWNAMIGACVRMGQPGMAVDLFRGMQQVSGVCPDEVTMVAVLSACTDLGALELGKWVESYIERERVRKSVELFNSLINMFVKCGDAEKALRVFRSMDERKRDIVSWTSILVGLGMHGRGEEAIALFEEMKGAGVSPDHVAFIGLLNACSHAGLVDQGWLYFSSMLKDYGLSPKVEHYGCMVDLLCRVGLFKEALEFVETMPIGPNSVIMRTLIKSFHGQGELKLSESITQRLIGNEPMHESNYVLLSNVYARMSLWQKKYAIRETMDKKGLKKHPGSTMIELGNEIYEFVSGDRTHNQYAEIYEMLNEMLKEITKAGYKPVMSEVLVDVDEEDKEDTLTWHSEKLAIAFALLKTLPGSPIRIVKNLRVCADCHIATKFISKVYNREILVRDKSRFHHFKDGFCSCKDFW*

Click here to download the sequence:
Link to NCBI Protein BLAST