Transcript Information: S_Transcript_225089.p1


Annotated TAIR IDAT4G16835.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:9472763-9474803 | Forward length=656
E-Value7E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.090520412364559
Replicate 20.67539151706678
Replicate 30.062730394842179
Condition 2: 8 Hour
Replicate 10.79788875336212
Replicate 21.3697050187588
Replicate 31.2325490111724
Condition 3: 24 Hour
Replicate 10.22290697439382
Replicate 20.30835117790949
Replicate 30.085789266684068


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_225089.p1 GENE.S_Transcript_225089~~S_Transcript_225089.p1 ORF type:3prime_partial len:294 (+),score=46.09,PPR_2|PF13041.2|0.00018,PPR_2|PF13041.2|0.00035,PPR_2|PF13041.2|2.5e-06,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|1.6e-05,PPR_2|PF13041.2|9.2e-06,PPR_2|PF13041.2|3.1e-07,PPR|PF01535.16|0.0015,PPR|PF01535.16|0.32,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|4.6e-08,PPR|PF01535.16|6.9e-06,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|9.8e-08,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|3.1e-07,PPR_1|PF12854.3|3.1e-05,PPR_1|PF12854.3|0.00033,PPR_1|PF12854.3|8.4e-05,PPR_1|PF12854.3|0.00011,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|0.00084,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|0.011,TPR_14|PF13428.2|31,TPR_14|PF13428.2|2.9e+02,TPR_14|PF13428.2|4.6e+02,TPR_14|PF13428.2|2.9e+03,TPR_14|PF13428.2|3.8e+02,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|2.1e+02 S_Transcript_225089:1315-2193(+)
ATGAATCACCTCATCCACAATAACCCAGTAAAAAACCCTTCTTTACTTACTCTGCACATCCTCTCTTATGTTCCCAAACACCCAATATGTTTCTTTTCTATCTCCCCAACTCACAACCCACATGATAACAAAAGAACAAATCAGGGTCCTTCCAAATATTTGGTTCCCCCCAATAACTTGAAAAGCCAAGCATCATATCCCAGTCCGTATTTTGATGGTAATTACAATGATGTCATTGCTTGTAATAGATTGATTACAAGCCACATTAGGGCAGGTGATTTAGAATCTGCTCTTAAAGTGTTTAGTAGAATGCCCATCAAGTCTGTTATCACTTGGAATTCATTACTAGCTGGGTATTCGAAAAAACAAGGGAAACTAACTCAAGCACGCCAACTGTTTGATAAAATTCCTGAACCAGATGTTTTCTCGTTTAATACCATGTTGTCCTGTTATTTGCGGAATTCGGATGTTGATAGTGCTAGGCAATTCTTTGAGCAAATGCCCATCAAGGATATTGCTTCTTGGAATAGTATGGTTTCGGGTTTTGCTGAGAATGGGATGATGGAGGAAGCTCAGAGACTGTTTTCGTCGATGCCCGAGAGGAATAGTGTGTCTTGGAATGTAATGATTTCGGGTTATGTGGATTGTGGGGATTTGGATTCAGCGTTGAGGTTGTTTAGTTTGGACCCTTTTAAGAGTGTTGTTGCTTGGACTACGTTGATAACTGGATACATGAAGGTGGGGAAAGTTGAGTTGGCTGAGAGAATATTCGAGGAAGTGCCTGTGAAGAGCTCTGTGACTTGGAATGCTATGATTTCTGGTTATGTTGAGAATTCTAGAGCAGAGGATGCCGTGAGGCTTTTCAAGATGATGGTGGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_225089.p1 GENE.S_Transcript_225089~~S_Transcript_225089.p1 ORF type:3prime_partial len:294 (+),score=46.09,PPR_2|PF13041.2|0.00018,PPR_2|PF13041.2|0.00035,PPR_2|PF13041.2|2.5e-06,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|1.6e-05,PPR_2|PF13041.2|9.2e-06,PPR_2|PF13041.2|3.1e-07,PPR|PF01535.16|0.0015,PPR|PF01535.16|0.32,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|4.6e-08,PPR|PF01535.16|6.9e-06,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|9.8e-08,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|3.1e-07,PPR_1|PF12854.3|3.1e-05,PPR_1|PF12854.3|0.00033,PPR_1|PF12854.3|8.4e-05,PPR_1|PF12854.3|0.00011,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|0.00084,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|0.011,TPR_14|PF13428.2|31,TPR_14|PF13428.2|2.9e+02,TPR_14|PF13428.2|4.6e+02,TPR_14|PF13428.2|2.9e+03,TPR_14|PF13428.2|3.8e+02,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|2.1e+02 S_Transcript_225089:1315-2193(+)
MNHLIHNNPVKNPSLLTLHILSYVPKHPICFFSISPTHNPHDNKRTNQGPSKYLVPPNNLKSQASYPSPYFDGNYNDVIACNRLITSHIRAGDLESALKVFSRMPIKSVITWNSLLAGYSKKQGKLTQARQLFDKIPEPDVFSFNTMLSCYLRNSDVDSARQFFEQMPIKDIASWNSMVSGFAENGMMEEAQRLFSSMPERNSVSWNVMISGYVDCGDLDSALRLFSLDPFKSVVAWTTLITGYMKVGKVELAERIFEEVPVKSSVTWNAMISGYVENSRAEDAVRLFKMMVE

Click here to download the sequence:
Link to NCBI Protein BLAST