Transcript Information: S_Transcript_225810.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value2E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.36707587910594
Replicate 20.15215716936217
Replicate 30.12719128333518
Condition 2: 8 Hour
Replicate 10.14707165735954
Replicate 20
Replicate 30.1470058455516
Condition 3: 24 Hour
Replicate 10.15065436890065
Replicate 20.46890644640719
Replicate 30.69578053531355


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_225810.p1 GENE.S_Transcript_225810~~S_Transcript_225810.p1 ORF type:5prime_partial len:145 (+),score=3.21,PIF1|PF05970.10|9e-15,Herpes_Helicase|PF02689.10|5.6e-07 S_Transcript_225810:2-436(+)
TCTGGGCTGCCTAATCATGAGCTCAAATTGAAAGTAGGTGCTCCGATCATGTTGCTTCGAAATATTGATTGCTCAGGTGGTTTATGCAATGGTACTCGATTACGTATAACTAAACTGGGTAGAAAAGTTATCGAAGCAGATGTTCTTACTGGTAGCAAGATTGGAAATAAGGTTTTCATACCTCGATTTTCGCTATCGTCATCAGATTCACACTTGCCATTCAAATTTACTCGGAGACAATTTCCCATTAGGATATGTTTCGCTATGACAATTAGTAAAAGTCAAGGTCAGTCTCTTGAACGTGTGGGTGTATATTTACCCACACCGGTTTTCACGCATGGTCAACTTTATGTTGCTATTTCACGCGTGACCAATAGAAAAGGTCTAAGTTTCTCACATTGGATGAGGATGGACGACCATGTAACAAAACTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_225810.p1 GENE.S_Transcript_225810~~S_Transcript_225810.p1 ORF type:5prime_partial len:145 (+),score=3.21,PIF1|PF05970.10|9e-15,Herpes_Helicase|PF02689.10|5.6e-07 S_Transcript_225810:2-436(+)
SGLPNHELKLKVGAPIMLLRNIDCSGGLCNGTRLRITKLGRKVIEADVLTGSKIGNKVFIPRFSLSSSDSHLPFKFTRRQFPIRICFAMTISKSQGQSLERVGVYLPTPVFTHGQLYVAISRVTNRKGLSFSHWMRMDDHVTKL*

Click here to download the sequence:
Link to NCBI Protein BLAST