Transcript Information: S_Transcript_225980.p1


Annotated TAIR IDAT4G20325.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:10980124-10982426 | Forward length=277
E-Value1.7E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.71170288895209
Replicate 30.74365871304841
Condition 2: 8 Hour
Replicate 11.0318737250226
Replicate 20.54125440257403
Replicate 31.7190199681437
Condition 3: 24 Hour
Replicate 11.0570104914804
Replicate 20.3655453480056
Replicate 30.61021075173668


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_225980.p1 GENE.S_Transcript_225980~~S_Transcript_225980.p1 ORF type:3prime_partial len:124 (+),score=4.29 S_Transcript_225980:185-553(+)
ATGTTATTGGGCTTGCTTGTAATTATTGAGGGCTTCTTGTTCTTGTATACTTTACTGATTAATACAAAGTTTCTTTATCCAAAAATAATAATCCCAAGGTTACCTAATTCGGCATTGAGTGCTCAGATGATTCTTTCCTTTCCTTTTCTTGAGTTTCTTCTAACTTGCTTCTCCCCATCCCCCCGGGGGACCAAAAATCTTTCATTTATGCTTCTCGTGATATTTTTCCCATCAGCAAGAACTCAATTTGATTTCTTTGTTTTCCTTTCCTTTCAATGGCAACGTAGATGGAAGCTTATATACATCAACACCAGTCGATCCTGTCTTTATTCTACTACCAATATTTCAGGATGCTCGGATGAAGAAGGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_225980.p1 GENE.S_Transcript_225980~~S_Transcript_225980.p1 ORF type:3prime_partial len:124 (+),score=4.29 S_Transcript_225980:185-553(+)
MLLGLLVIIEGFLFLYTLLINTKFLYPKIIIPRLPNSALSAQMILSFPFLEFLLTCFSPSPRGTKNLSFMLLVIFFPSARTQFDFFVFLSFQWQRRWKLIYINTSRSCLYSTTNISGCSDEEG

Click here to download the sequence:
Link to NCBI Protein BLAST