Transcript Information: S_Transcript_226220.p1


Annotated TAIR IDAT5G47460.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19252463-19254193 | Reverse length=576
E-Value7.7E-174
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.35132674897928
Replicate 20.36407243494249
Replicate 30.33476913683103
Condition 2: 8 Hour
Replicate 11.0909028050019
Replicate 21.3659379532506
Replicate 31.3366373085632
Condition 3: 24 Hour
Replicate 10.3244289627316
Replicate 20.22439417402324
Replicate 30.33296428257579


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_226220.p1 GENE.S_Transcript_226220~~S_Transcript_226220.p1 ORF type:5prime_partial len:606 (+),score=83.58,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|2.5e-11,PPR_2|PF13041.2|0.25,PPR_2|PF13041.2|1.6,PPR_2|PF13041.2|7.6e-06,PPR_2|PF13041.2|3.6e-07,PPR_2|PF13041.2|3.4,PPR_2|PF13041.2|2.8e-09,PPR_2|PF13041.2|8.4,PPR_2|PF13041.2|5.9e+02,PPR_2|PF13041.2|6.9e+03,PPR|PF01535.16|4.7,PPR|PF01535.16|9.5e-06,PPR|PF01535.16|2.1e+03,PPR|PF01535.16|0.02,PPR|PF01535.16|0.18,PPR|PF01535.16|5.4e-05,PPR|PF01535.16|0.0011,PPR|PF01535.16|9.6e+02,PPR|PF01535.16|0.0064,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|3.1e+02,PPR|PF01535.16|0.87,PPR|PF01535.16|6.9e+03,PPR|PF01535.16|2.4e+02,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|4.4e-06,PPR_1|PF12854.3|0.76,PPR_1|PF12854.3|0.87,PPR_1|PF12854.3|2.9e-07,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|7.1e+02,PPR_1|PF12854.3|1e+03,PPR_1|PF12854.3|6.6,PPR_1|PF12854.3|0.0027,PPR_1|PF12854.3|2.1e+02,PPR_3|PF13812.2|3.3,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|30,PPR_3|PF13812.2|0.022,PPR_3|PF13812.2|0.046,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|6.2,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|4,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|66 S_Transcript_226220:2-1819(+)
AAAAAGGGGCCAAAAAAAGGGGGGGGGGGGGGCTGGTGCTCCTACAATAAGTCAACGTCAAGTTTCATAATTCTGGGGAAGGCAAGAAAAGCGGGAATGCAAAGGGCTCTGCCTCTGCTTAGAGCGCTTGACAATCACCTTCAAACACAAAACCTTCTCCTTCTCTCCCTCTCCTCATCTACCTCTATTTCATTTAACTCATCCAATCCAAGAAAATACTATACTACAGATGAAACAACCAAACCAAATGGGCATGATTTGGTCAATATGATCCGAAACTCTACCATTCAAGGCAATGTTTTTCATGGAAAACAGCTTCATTGCTACGTTTTGCGTTCTGGGTGTGCTGCCAATGTCTTTGTTGGCACGGCTTTGGTCAGTTTTTATGCGAAATTGGTATCGCTTGACGATGCGCACCAACTGTTTGATGACATGCCCCAACCAAATGTTGTCACCTGGAACACTATAATTTCTGGGTATGTACACTCTGGGAAGCTTCACAAGGCGCTATGTTTTTTCCTTGATCTTATTAAGTCGGACCTTCGAGCTGATGCGTACTCGTTTAGTTCTGCATTAGCTGCTTGTGGTCAGTTGTGTTTGTTGCCACTGGGGATGTCAATACATTCGAGAATTGTCATGTGTGGATTGGAATCAAGTGTTGTTTTGGCAAACTGTTTGGTTGATATGTATGGAAAGTGCGGTTCAGTGGATGGTGCCATTAACATGTTTGATGGGCTGGTTGAGAAGGATTTGATTTCGTGGAACTCGGTTATTGCAGCTAGTGCTAGAAACCAAAGACTTCAACTTGCATTTGCCTATTTTTATCAGATGCCGTGCCCTGATACCGTTTCCTATAATGAACTTATCAGTGGCATAGCACAGTTCGGTGACATGGATGAGGCCATTGAGATCCTGAGGAGCATGAAGGAACCAAATTCATCATCGTGGAATTCAATAATAACAGGTTATGTGGTTCGGGGTAGACCATGGGAGGCTCTGAACTTCTTCACTCAAATCCATGCCAATGGAGGTGATATGGATGAATATACATTCTCGAGTGTGTTGAGTGGAATCACAAGTGTTTCGGCCATAACATGGGGGACACTGCTCCATTGTTACACCATCACATGCGGCTTGGTTGAATCGACAATTATTGGGAGTGCCCTCATTGACATGTACTCAAAATGCGGGCAGTTAAAAGATGCAGAAATGGTGTTTCATCTGCTGGCTAGCAAGAATATAGTTTCTTGGAACGCGATGATCTCTGGCTTTGCTCGTAATGGAGATTCACACAAGGTTATTCAGTATTTTGAGGAACTGAAAGGGGTGAAGGGATTGCAGGCAGATGATATCACCTTTGTTAATCTTTTGGCAGCATGTTCACATAATAAAATGCCATTAGAGAAGGCTTATGAGTATTTTACGTCCATGATCAATGATTATGGGATCCAACCAAGACCTGAGCACTTGTCTTCGCTGATTAGGCTCATGGGACGTCATGGTGATGTGCGCAGGGCAGAGATGATGATTCATGAATTAGGCTTTGGGTCATGCAGTTCAGTTTGGAGGGCTTTGCTTGGCGCCTGTGAAGCTTATGGGGACTTGGACGTTGCGAGGTTCGCAGCTGCCAAGTTGATGGAATTAGGTGGTAATGATGAGTTTGGATATGTGGTTTTGTCAAATATGAACAAGGGTCATGGGAATTGGGTAGATGCAACTGCAGCCTGGAAACTGATGAGAGAGCAAGGGGTAGTCAAAGAAGCTGGCTTTAGTCGGATTGAATCGGGAAAGACAACTTATGTTAAAACAGGATTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_226220.p1 GENE.S_Transcript_226220~~S_Transcript_226220.p1 ORF type:5prime_partial len:606 (+),score=83.58,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|2.5e-11,PPR_2|PF13041.2|0.25,PPR_2|PF13041.2|1.6,PPR_2|PF13041.2|7.6e-06,PPR_2|PF13041.2|3.6e-07,PPR_2|PF13041.2|3.4,PPR_2|PF13041.2|2.8e-09,PPR_2|PF13041.2|8.4,PPR_2|PF13041.2|5.9e+02,PPR_2|PF13041.2|6.9e+03,PPR|PF01535.16|4.7,PPR|PF01535.16|9.5e-06,PPR|PF01535.16|2.1e+03,PPR|PF01535.16|0.02,PPR|PF01535.16|0.18,PPR|PF01535.16|5.4e-05,PPR|PF01535.16|0.0011,PPR|PF01535.16|9.6e+02,PPR|PF01535.16|0.0064,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|3.1e+02,PPR|PF01535.16|0.87,PPR|PF01535.16|6.9e+03,PPR|PF01535.16|2.4e+02,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|4.4e-06,PPR_1|PF12854.3|0.76,PPR_1|PF12854.3|0.87,PPR_1|PF12854.3|2.9e-07,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|7.1e+02,PPR_1|PF12854.3|1e+03,PPR_1|PF12854.3|6.6,PPR_1|PF12854.3|0.0027,PPR_1|PF12854.3|2.1e+02,PPR_3|PF13812.2|3.3,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|30,PPR_3|PF13812.2|0.022,PPR_3|PF13812.2|0.046,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|6.2,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|4,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|66 S_Transcript_226220:2-1819(+)
KKGPKKGGGGGWCSYNKSTSSFIILGKARKAGMQRALPLLRALDNHLQTQNLLLLSLSSSTSISFNSSNPRKYYTTDETTKPNGHDLVNMIRNSTIQGNVFHGKQLHCYVLRSGCAANVFVGTALVSFYAKLVSLDDAHQLFDDMPQPNVVTWNTIISGYVHSGKLHKALCFFLDLIKSDLRADAYSFSSALAACGQLCLLPLGMSIHSRIVMCGLESSVVLANCLVDMYGKCGSVDGAINMFDGLVEKDLISWNSVIAASARNQRLQLAFAYFYQMPCPDTVSYNELISGIAQFGDMDEAIEILRSMKEPNSSSWNSIITGYVVRGRPWEALNFFTQIHANGGDMDEYTFSSVLSGITSVSAITWGTLLHCYTITCGLVESTIIGSALIDMYSKCGQLKDAEMVFHLLASKNIVSWNAMISGFARNGDSHKVIQYFEELKGVKGLQADDITFVNLLAACSHNKMPLEKAYEYFTSMINDYGIQPRPEHLSSLIRLMGRHGDVRRAEMMIHELGFGSCSSVWRALLGACEAYGDLDVARFAAAKLMELGGNDEFGYVVLSNMNKGHGNWVDATAAWKLMREQGVVKEAGFSRIESGKTTYVKTGF*

Click here to download the sequence:
Link to NCBI Protein BLAST