Transcript Information: S_Transcript_226278.p2


Annotated TAIR IDAT1G15820.1
Annotated Gene Namelight harvesting complex photosystem II subunit 6
Annotated Gene Symbol(s)LHCB6, CP24
Annotation TypeHomolog
Chromosome Positionchr1:5446685-5447676 | Reverse length=258
E-Value2E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.16950956200752
Replicate 20.28105464404477
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.27153945993607
Condition 3: 24 Hour
Replicate 10.13913938529041
Replicate 20.57742195098974
Replicate 30.32129992872759


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_226278.p2 GENE.S_Transcript_226278~~S_Transcript_226278.p2 ORF type:3prime_partial len:157 (+),score=-23.09,Chloroa_b-bind|PF00504.17|1.3e-19 S_Transcript_226278:49-516(+)
ATGACCTCCCTCGCGTTCAGCACAACCCGCCCATGCGCGGCCGTCCGCCCAGCGGCAGCCAGTGGCCGCAGCGTCGCGGCGCGCGCCGTTGACCAGCGTGAAGGCGGCGGCGAAAAATACGCGCGCAACGAGCTCAACGGCATCACCGCGCCTACCGGCTACTTTGACCCCATTGGCCTTGCCCAAGGCACGACGCCGGAGCAGATGAAGCGGTACCGCGAGGCGGAGCTCACGCACGGCCGCGTCTGCATGCTCGCCGCGCTCGGCATCCTCGTCGGCGAGAGCGTGCAGGACAAGTCGCTCTTCTACAACTGGGACGGTGGCATCCAGGGCCCCGCGATCGTGCACTTCCAGCAGACGAAGCAGGGCTTCTGGGAGCCGCTCGTGCTCGCGATCGGCATCGCCGAGGCGTGGCGCATTGGCCGCGGCTGGGCCGAGCCTGTCGAGAATGGCGTGTTCACGCTGCGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_226278.p2 GENE.S_Transcript_226278~~S_Transcript_226278.p2 ORF type:3prime_partial len:157 (+),score=-23.09,Chloroa_b-bind|PF00504.17|1.3e-19 S_Transcript_226278:49-516(+)
MTSLAFSTTRPCAAVRPAAASGRSVAARAVDQREGGGEKYARNELNGITAPTGYFDPIGLAQGTTPEQMKRYREAELTHGRVCMLAALGILVGESVQDKSLFYNWDGGIQGPAIVHFQQTKQGFWEPLVLAIGIAEAWRIGRGWAEPVENGVFTLR

Click here to download the sequence:
Link to NCBI Protein BLAST