Transcript Information: S_Transcript_226282.p2


Annotated TAIR IDAT1G15820.1
Annotated Gene Namelight harvesting complex photosystem II subunit 6
Annotated Gene Symbol(s)LHCB6, CP24
Annotation TypeHomolog
Chromosome Positionchr1:5446685-5447676 | Reverse length=258
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.29406631199094
Replicate 20.36568159487594
Replicate 30.10189356952266
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.35330134151903
Condition 3: 24 Hour
Replicate 10
Replicate 20.62607214299302
Replicate 30.5573932465219


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_226282.p2 GENE.S_Transcript_226282~~S_Transcript_226282.p2 ORF type:3prime_partial len:181 (+),score=-7.38,Chloroa_b-bind|PF00504.17|1.4e-27 S_Transcript_226282:60-599(+)
ATGATGCTCTCTGCTACCTCCACTGCCGCTGTCCGCCGTGTGGCCCCGATCCGCTCGGGCAAGCCCGCCCGTCGCGTGTTCGCACGTGCAGGTGGCGAGGACTACGCCAAGACCCTCAACGGCATCACAGCCCCCACCGGCTACTTTGACCCCCTCTCCCTCGCTGCCAACACCTCGCCCGAGCAGGTGAAGCGCTACCGTGAGGCAGAGCTGACGCACGGCCGCGTGTGCATGCTCGCAGCTGTCGGCTTCCTCGTGGGCGAGGCAGTCGAGGGCATGACGCTCTTCTACAACTGGGACGGCAACATCACGGGCCCAGCCATCGTGCACTTCCAGCAGACCCGCCAGGGCTTCTGGGAGCCGCTGGTGATCTTCATCGGCATCAGCGAGGCATACCGCGTAGCAGTCGCATGGGCAAACCCCGCCGAGGAAGGCGCGTTCGTCCTCAAGGACAACTACGAGCCCGGTCAGCTCGGCTTTGACCCTCTGGGCATCTGCCCCCAGGACCAGGACGAGTTCAACACGCTGCAGACCAAGGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_226282.p2 GENE.S_Transcript_226282~~S_Transcript_226282.p2 ORF type:3prime_partial len:181 (+),score=-7.38,Chloroa_b-bind|PF00504.17|1.4e-27 S_Transcript_226282:60-599(+)
MMLSATSTAAVRRVAPIRSGKPARRVFARAGGEDYAKTLNGITAPTGYFDPLSLAANTSPEQVKRYREAELTHGRVCMLAAVGFLVGEAVEGMTLFYNWDGNITGPAIVHFQQTRQGFWEPLVIFIGISEAYRVAVAWANPAEEGAFVLKDNYEPGQLGFDPLGICPQDQDEFNTLQTKE

Click here to download the sequence:
Link to NCBI Protein BLAST