Transcript Information: S_Transcript_226397.p1


Annotated TAIR IDAT2G22070.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:9383602-9385962 | Forward length=786
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.081066971796047
Condition 2: 8 Hour
Replicate 10.3046484331019
Replicate 20.2212600414918
Replicate 30.32793611699971
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.24944879081983


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_226397.p1 GENE.S_Transcript_226397~~S_Transcript_226397.p1 ORF type:complete len:910 (+),score=141.66,PPR|PF01535.16|33,PPR|PF01535.16|0.064,PPR|PF01535.16|0.011,PPR|PF01535.16|4.7e-05,PPR|PF01535.16|0.00037,PPR|PF01535.16|0.019,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|6,PPR|PF01535.16|0.002,PPR|PF01535.16|7.3e-05,PPR|PF01535.16|0.97,PPR|PF01535.16|1.8e-07,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|0.033,PPR|PF01535.16|9.1e+03,PPR|PF01535.16|0.087,PPR_2|PF13041.2|70,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|0.023,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|0.019,PPR_2|PF13041.2|0.00056,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|25,PPR_2|PF13041.2|4.6e-05,PPR_2|PF13041.2|1.7e-08,PPR_2|PF13041.2|2,PPR_2|PF13041.2|6.5e-09,PPR_2|PF13041.2|22,PPR_2|PF13041.2|3.4,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|2.9e+03,PPR_1|PF12854.3|8.4e+03,PPR_1|PF12854.3|0.48,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|0.22,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|11,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|0.0055,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|5.1e+03,PPR_1|PF12854.3|38,PPR_1|PF12854.3|0.00094,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|0.0036,DYW_deaminase|PF14432.2|5e+03,DYW_deaminase|PF14432.2|2.4e-37,PPR_3|PF13812.2|14,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|2,PPR_3|PF13812.2|3.3e+02,PPR_3|PF13812.2|0.0074,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|7.7e+02,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|7.6e+02,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|4.4,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|25,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|3.8,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|4.5e+02,TPR_14|PF13428.2|5.3e+02,TPR_14|PF13428.2|9.6,TPR_14|PF13428.2|62,TPR_14|PF13428.2|6.1e+03,TPR_14|PF13428.2|1.2e+03,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1.6e+04 S_Transcript_226397:98-2731(+)
ATGGAAGTCAAATCTTTGAGCTTCTTACCACCTTCAACTACTCATTTCCCTTATCCAACTTTCCAAACGAAACAAAGGGTAATAGTAACTCTCCCTCACAGCGTTCTCAAAATCACAAGACCCATACTTCCATACCCACCTCTAAAGACCACCAACAAAACCCTGCTAATTTCAAACCCTATTTCCAATCAAAACCCGCCAAAAAAAGAGAAAAGCTTTTCCCTTGATACCAATCAAAGCACAAGCTCAGATATTATACGATTAATGGATGGTCTTGGTCTTATAGTTACTCCTGATATATATGCTTCTCTTGTTGTAGAGTGTACGAAAAAGCGCGACGCCTTTCGAGCAAAAGAACTGTTTGCCCACATGAAAAGGAATCGTCGGATGGTGGGTTTTCTAAATCAGCCATCTGGGTCGGTTTTGCTTAACCGGATTTTGATGATGTTTGTGAGTTGTGGTTGTTTAGATGATGCCCACCAACTGTTTGATGAAATGCCAGTGAAAAATACCTTTTCCTGGAACAGCATTGTCTCAGGGTATGCTAAGGACGGATCTTTGGGTGTTGCTCATCGTGTTTTCGAGCAAATTCCTGAACCAGATTCTGTTTCTTGGACTGCAATGATTGTGGGTTATAACCAGATGGGTTACTTTGGAAATGCAGTCAAGATGTTTCTGGATATGATTTCGAGTGGTGTTGCACCGACCCAGTTCACAGTTACTAATATTCTTGCATCCTGTGCTTACACGAAAGCGATCAGTGTTGGAAAGAAGGTTCACTCGTTTGTTGTTAAGCATGGACTTGGTAGTTATGTCGCGGTTGGGAATTCACTTCTTAACATGTACGCAAAGACCGGTGATCTTGAGAGGGCGAGGATTGTTTTTAATAGGATGAGGGTGAGAAATGTTGCGAGCTGGAATACTATGATTTTCTTGCATATGCACTCTGGTCGTGTTGATCTTGCTCATGCTCAGTTTGAGCAAATGGCTGAACGTGACATTGTGTCTTGGAATTCTATGGTTACAGGGTACAATCAACATGGGTTTGATATCAAGGCTCTTGAAATATTCTCAAGAATGGTCAAGGATTCTTCTCTGCGTCCTGATAAGTTTACGTTGGCTAGTGCTTTATCAGCTTGTGCAAATCTTGAGAACTTGAGAGCTGGGAAACAAATCCACACTTATATGATAAGGACCAAGTTTTATATGTATGGGGCTGTTGAGAATGCTTTGATCTCAATGTACTCTAAGTGTGGAGGTGTAAAAAGTGCTCAAAAGATTATTGAGAACAATGGGGTTTCCAATCTCAATGTGATAGCATTTACAGCATTAATTGATGGGTATGTGAAGATTGGAGATATTAATCCTGCCAGAAAGCTATTTGACTCATTAAAAGATCGAGATGTAATTGTTTGGACGGCAATGATCGTAGGTTATGAGCAGAATGGCATGTATGACGATACAGTGAGGTTATTCAGATTAATGCTTAAGGAAGGACCAAGGCCAAATCATTACACTCTAGCTGCAATGTTAAGTGTTTGTTCGAGCTTGGCTAATCTGGAGCATGGGAGACAAATCCATGGAGTTGCCATAAGGTCAGGAGAAGCATTGTCAGTTTCTGTATGCAATGCATTAATCACGATGTATGCCAAGTCTGGAAGCATAAATAACGCTAGGCTTGTTTTTAAGCTTGTCGACTGGTACAGTGATACTGTTACTTGGACTTCCATAATCATAGCTTTAGCTCAACATGGCCTAGGAGAAGAAGCGGTTGAAATGTTTGAGAAAATGCTGATGTTAGGTATAAAGCCGGACCATATAACTTATCTTGGTGTGCTTATTGCATGCACACATATTGGATTGGTAGAAAAAGGAAAAACTTACTACAACATAATGCAAAATGTGCACAAAATTGAACCAACTCATAGCCACTATGCTTGCATGATTGACCTTCTTGGACGTGCTGGTTTACTACAAGAAGCACAAGATTTTATAGAGCAAATGCCTGTTGAACCTGACAATATTGCTTGGGGTTCATTTTTAGCATCTTGTACAGTTCATAAAAATCCAGATTTGGCGAAATTTGCAGCAGAGAGATTGCTTCTTATCGATCCAGAGAATAGTGGAGCCTTCTCAGCCCTTGCCAATGTTAATGCGGCATGTGGAAAATGGTCAGAGGCTGCCAAAGTCAGAAAGTCGATGAAAGAAAAAGGAGTCAAGAAAGACCAAGGACTTAGTTGGCTTCAGCTCAGGAATGAAGTTCATGTCTTTGGCGTTGATGATGCTCTTCACCCTCAACGAGAAGCAATCTATGCATTGATGGCAAAAATCTGGGAGGACATCAAGAAGATGGGCTTCATCCCAGACACTGGTTCAGTGCTGCATGACCTCGATGAAGAATTAAAGGAACAAATTTTGAAGCATCATAGTGAGAAGCTTGCTATAGCATTTGGTTTACTGAATACCCCTGACAATACTACATTAAGAATTATGAAAAATTTGCGTGTCTGCAATGACTGTCATTCCGCTATCAAATTCATTTCAAAGCTAGTGGGCAGAGAAATTATACTCAGGGATGCTACACGCTTCCACCATTTCAAAGGCGGTGTTTGTTCTTGTAGGGATTTTTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_226397.p1 GENE.S_Transcript_226397~~S_Transcript_226397.p1 ORF type:complete len:910 (+),score=141.66,PPR|PF01535.16|33,PPR|PF01535.16|0.064,PPR|PF01535.16|0.011,PPR|PF01535.16|4.7e-05,PPR|PF01535.16|0.00037,PPR|PF01535.16|0.019,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|6,PPR|PF01535.16|0.002,PPR|PF01535.16|7.3e-05,PPR|PF01535.16|0.97,PPR|PF01535.16|1.8e-07,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|0.033,PPR|PF01535.16|9.1e+03,PPR|PF01535.16|0.087,PPR_2|PF13041.2|70,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|0.023,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|0.019,PPR_2|PF13041.2|0.00056,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|25,PPR_2|PF13041.2|4.6e-05,PPR_2|PF13041.2|1.7e-08,PPR_2|PF13041.2|2,PPR_2|PF13041.2|6.5e-09,PPR_2|PF13041.2|22,PPR_2|PF13041.2|3.4,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|2.9e+03,PPR_1|PF12854.3|8.4e+03,PPR_1|PF12854.3|0.48,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|0.22,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|11,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|0.0055,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|5.1e+03,PPR_1|PF12854.3|38,PPR_1|PF12854.3|0.00094,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|0.0036,DYW_deaminase|PF14432.2|5e+03,DYW_deaminase|PF14432.2|2.4e-37,PPR_3|PF13812.2|14,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|2,PPR_3|PF13812.2|3.3e+02,PPR_3|PF13812.2|0.0074,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|7.7e+02,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|7.6e+02,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|4.4,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|25,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|3.8,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|4.5e+02,TPR_14|PF13428.2|5.3e+02,TPR_14|PF13428.2|9.6,TPR_14|PF13428.2|62,TPR_14|PF13428.2|6.1e+03,TPR_14|PF13428.2|1.2e+03,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1.6e+04 S_Transcript_226397:98-2731(+)
MEVKSLSFLPPSTTHFPYPTFQTKQRVIVTLPHSVLKITRPILPYPPLKTTNKTLLISNPISNQNPPKKEKSFSLDTNQSTSSDIIRLMDGLGLIVTPDIYASLVVECTKKRDAFRAKELFAHMKRNRRMVGFLNQPSGSVLLNRILMMFVSCGCLDDAHQLFDEMPVKNTFSWNSIVSGYAKDGSLGVAHRVFEQIPEPDSVSWTAMIVGYNQMGYFGNAVKMFLDMISSGVAPTQFTVTNILASCAYTKAISVGKKVHSFVVKHGLGSYVAVGNSLLNMYAKTGDLERARIVFNRMRVRNVASWNTMIFLHMHSGRVDLAHAQFEQMAERDIVSWNSMVTGYNQHGFDIKALEIFSRMVKDSSLRPDKFTLASALSACANLENLRAGKQIHTYMIRTKFYMYGAVENALISMYSKCGGVKSAQKIIENNGVSNLNVIAFTALIDGYVKIGDINPARKLFDSLKDRDVIVWTAMIVGYEQNGMYDDTVRLFRLMLKEGPRPNHYTLAAMLSVCSSLANLEHGRQIHGVAIRSGEALSVSVCNALITMYAKSGSINNARLVFKLVDWYSDTVTWTSIIIALAQHGLGEEAVEMFEKMLMLGIKPDHITYLGVLIACTHIGLVEKGKTYYNIMQNVHKIEPTHSHYACMIDLLGRAGLLQEAQDFIEQMPVEPDNIAWGSFLASCTVHKNPDLAKFAAERLLLIDPENSGAFSALANVNAACGKWSEAAKVRKSMKEKGVKKDQGLSWLQLRNEVHVFGVDDALHPQREAIYALMAKIWEDIKKMGFIPDTGSVLHDLDEELKEQILKHHSEKLAIAFGLLNTPDNTTLRIMKNLRVCNDCHSAIKFISKLVGREIILRDATRFHHFKGGVCSCRDFW*

Click here to download the sequence:
Link to NCBI Protein BLAST