Transcript Information: S_Transcript_226528.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.41367359432923
Replicate 20.57157485900297
Replicate 30.28667465414923
Condition 2: 8 Hour
Replicate 11.3259310041741
Replicate 20.9273305135638
Replicate 30.55222403121713
Condition 3: 24 Hour
Replicate 10.90548739857385
Replicate 21.056861679726
Replicate 30.65342083951078


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_226528.p1 GENE.S_Transcript_226528~~S_Transcript_226528.p1 ORF type:complete len:193 (+),score=31.97,UBN2_3|PF14244.2|6.6e-17,UBN2_3|PF14244.2|1e+03,Retrotrans_gag|PF03732.13|3e-10,Retrotrans_gag|PF03732.13|1.8e+03,UBN2|PF14223.2|0.00018,UBN2|PF14223.2|0.15 S_Transcript_226528:369-947(+)
ATGGTGATTGCCTGGTTAATGAACTCAGTTTCTGATACGATTACTCAATCTATCTTGGATATACCAACTGCTCGTGAGATATGGCTGAGTCTTGAAAAACGATTTTGTCTGACTAATGGTTCTAGAAAATACAAGCTGAATAAATCTACATATGATCTGAAACAGTTGGGTACAACAATTAGTGATTACTATACTAGGTTTCAAAGTGTTTGGGAAGAATTGGATTCATTATCTGAACTTCCTACTATAAGTGAGACCAATGCTGAGATCAATGCATTTATTGCTGCACTTGCAAAACAACAAAGTGAACAGCATCTTTTTCAATTCTTGAATGGATTAGATGACATATATGGCACTATAAGGAGTAATTTGTTGATGAGATGTTCTTTACCCACTGTTGAGGAGGCATGTTCTATTATACAGCAAGAAGAATCTCAGAAAGAAATTTTAGATCATTCTGAAATTAGAACTGAGATAGTTGCTTTGTATAGCAAACAAAATGATCTCACATGTAGCAAGTGTAGAAACAAAGGCCATGATATAGCAAGATGTTGGCAAGTTATTGGATATCTTGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_226528.p1 GENE.S_Transcript_226528~~S_Transcript_226528.p1 ORF type:complete len:193 (+),score=31.97,UBN2_3|PF14244.2|6.6e-17,UBN2_3|PF14244.2|1e+03,Retrotrans_gag|PF03732.13|3e-10,Retrotrans_gag|PF03732.13|1.8e+03,UBN2|PF14223.2|0.00018,UBN2|PF14223.2|0.15 S_Transcript_226528:369-947(+)
MVIAWLMNSVSDTITQSILDIPTAREIWLSLEKRFCLTNGSRKYKLNKSTYDLKQLGTTISDYYTRFQSVWEELDSLSELPTISETNAEINAFIAALAKQQSEQHLFQFLNGLDDIYGTIRSNLLMRCSLPTVEEACSIIQQEESQKEILDHSEIRTEIVALYSKQNDLTCSKCRNKGHDIARCWQVIGYLD*

Click here to download the sequence:
Link to NCBI Protein BLAST