Transcript Information: S_Transcript_22672.p1


Annotated TAIR IDAT1G29940.1
Annotated Gene Namenuclear RNA polymerase A2
Annotated Gene Symbol(s)NRPA2
Annotation TypeOrtholog
Chromosome Positionchr1:10479322-10486670 | Reverse length=1178
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.383359260545
Replicate 210.385791521985
Replicate 310.887314939937
Condition 2: 8 Hour
Replicate 116.477888531729
Replicate 217.684955837341
Replicate 313.885132282125
Condition 3: 24 Hour
Replicate 19.8200069974681
Replicate 28.6695326725468
Replicate 39.1774868955003


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_22672.p1 GENE.S_Transcript_22672~~S_Transcript_22672.p1 ORF type:complete len:1179 (+),score=214.46,RNA_pol_Rpb2_6|PF00562.24|1.2e-107,RNA_pol_Rpb2_1|PF04563.11|3.1e-30,RNA_pol_Rpb2_3|PF04565.12|2.7e-26,RNA_pol_Rpb2_7|PF04560.16|1.7e+03,RNA_pol_Rpb2_7|PF04560.16|8.9e-23,RNA_pol_Rpa2_4|PF06883.8|1.7e-18,RNA_pol_Rpb2_2|PF04561.10|4.1e-11 S_Transcript_22672:326-3862(+)
ATGGCGAAAAACAAAGAACTAGACTTGGAGCCCTTAAGAGCTCTGTTTCAGCATCACATAGACTCCTTTGATCACTTAATTGAGTCTGGCTTAGAGTCCATGTTGAGCAACGTCAAGCCTATCGAGCTTCGCGATCCCTACAAAAACACCAAGCTTAGAATATTTATTGGAAAACCTCTTTTGTACCCTCCACAAAAGGAGGCTAGAAGGGGTTTACCAGCAAGGGCTCTTTACCCCTTTGAGTGTCGTCAGGCAAAGATATCGTATTCAGGGACCTTTATGGCTGAGGTTTGCTTTCAGTATAATGATGGACCTATTATTAGGGAACGATTCAATTTTGGACATTTTCCTGTCATGTTCAAGTCCAAGCTCTGCAACTTGAGGAATGCGTCCCCTGAAACACTAGTTTCGCACAGAGAGGAGCCATTGGAAATGGGAGGATACTTCATTTTAAATGGGCTTGAGAGGCTTGTTCGGCTACTGATCATGCAAAAGCGCAACTATCCAATGAGCATGGTGCGAAGCTCATTTCGTGTTCGCAGGGAAGGTTACAGTGATAAAGCAGTTGTAATAAGATGTGTTCAGGAGGATCAATCTTCTGTTACTGTCAGACTGTATTATCTTAATAATGGAAGCGCCAGACTTGGCTTTTGGATACAAGGGAGGGAGTTCTTGCTTCCTGTGGGTGTTGTTTTGAAGGCACTTGTCGATACAACTGATCATGAAATATATGTGGCGTTGACATGTTCGTATAACGAGAGATACGAGGGAGTTAAAGGTGCTATTGGCACACAGCTTGTTGGTGAAAGAGCAAAAATTATTCTTGATGAGTTGCACGGATTGTCCCTTTTGACTCGTCGTCAATGTATTGAGCACATAGGACAGTACTTTCATCCTGTCATGGATGGGCTGGAGAATGAAAGTTATTCAGTTGTTGGGGAAGCTGTGCTGAATGATTTCATATTTGTGCACCTTGGCTCCAACAACCACGACAAGTTCAATCTTCTAATATTCATGGTGCAGAAACTTTTTTCGCTGATAGATCAGACATCTGTCCCAGACAATCCAGATTCATTGCAAAATCAAGAAGTTCTGCAAGTTGGGCAGTTGATCTCTATTTATTTAAAGGATAAACTGCAGGAATGGCTTCAAAAATCAAGGAGCCTTCTGAACGATGAGATAAGCAAGCAAAGTGAACATTTTGATCTTGCAAACGTACAACAAGTCAAGAAGATGTTAGACAAAAATCCTTCAAGACAGATTGGTACTGCCATTGACAATATGTTGAAGACTGGGAGATTAGCTACACGTTCAGGTCTCGACTTGCAGCAGAAAGCAGGCTTTGCTATTCAGGCTGATAGGCTCAATTTTATGCGTTTTCTTTCAAATTTTCGTGCTGTACATCGAGGTTCCGCATTTGCTGGAGCTCGTACTACAAGTGTTCGGAAGCTTTTACCTGAGGCTTGGGGGTTTCTCTGTCCTGTGCACACACCTGATGGTGAGCCTTGTGGATTGCTGAACCATTTGACCTGTACATGCAGAATCACATCATACTTTGATTCCCAAGGAGTCCTAAAAAATTTCTTTAAAATGAGACTGTCTATCATTGATGTTTTGGTCAAATTGGGGATGAAGCCTTCATTACCAAAGCTTGTGCAAGCCGGCCCTCCTGAAGTTCTTTGTGTTCTTATTGATGGAAGAGTGATTGGATCTGTATCCACTCTGGAAGTTGAGAAAGTTGTCAACCACTTACGAAGATTAAAATTGTCCGAAGTTCCTGCGATTCCTGATGATCTGGAAGTGGGCTACGTTCCTTTGAGCTTTGGTGGAGCATATCCTGGATTGTTCCTTTTCACAACTCCTTCAAGGTTTATTCGTCCAGTTAGAAACATCTCTATTCCTCCTGAGAATAATAACGATATTGAACTAATTGGACCATTTGAACAGGTTTATATGGAAATTAGATGTCCTGATGGTGGTGATGGAGGGAGGGGAAACAACACTCCTGCAACTCATGAGGAAATACATCCAACAGGGATACTGAGTGTCGTTGCTAATCTGACACCATGGTCTAATCACAACCAGAGCCCACGTAATATGTACCAATGTCAGATGGCAAAACAAACCATGGCCTTTTCATCTCAAGCAATTAACTTCCGAACTGATCAAAAGGGATACCATCTTCAGACACCACAAAGTCCAATTGTGCGCACAGAGTCCTATTCTACATATTGCATCGATGAATATCCTTCGGGCACCAATGCAATTGTAGCGGTGTTAGCATATACTGGTTATGATATGGAAGATGCAATGATTTTGAACAAATCTTCAGTTGAACATGGAATGTGCCACGCCAATATATATCAGACAGAAACTATTGACTTAACTGACGAAGGTGGCAGAAGAGCTCGTACAGAAAAAGCTTTTAAAAGAAGTACTCTTGATAAATCAACATGTTCTTTGATCGATGGGGATGGACTCCCTTACATTGGACAGGTACTACATCCAAATGACCCATACTGTACTATCACTAATAAGTTGAATAGTACAATGGAGACACGAAAATTGAAGGGTTCAGAACTGGCATTTGTTGATTCTGTAGTCATTGATGGAAAGCACAAGGCTATACCACTTGATGGGCATGGGTTCCAAAAGGTGAATATTCGGTTAAGGCGTCCAAGAAATCCTATAATTGGAGATAAATTTAGCAGTAGACATGGGCAGAAGGGTGTCTGCTCTCGGCTCTGGCCAGATATTGATATGCCATTTTCACATAGTACAGGGATGCGTCCAGATCTTATCATCAATCCACATGCGTTTCCTTCAAGGATGACAATTGCAATGCTTTTGGAGTCGATTGCTGCCAAGGGTGGCAGCTTAGATGGAAAGTTTGTTGACGCAACACCATTTTCAGACTCCTTCAAGAAGGCTGATGAAGAGCATGGCTCTGAGTCAAGTACACTTGTTGATGACCTTGGTTCCATGTTAACTGCTCATGGATTTAATAAATATGGTACAGAAGTTTTATATAGCGGAGTCTATGGAACAGAACTAACATGTGAAATCTTTATTGGGCCTGTTTATTATCAGCGATTAAGGCATATGGTATCGGACAAATTTCAGGTTCGTTCAACTGGAACAGTTGATCAACTTACACGGCAGCCTATCAAAGGTAGAAAGCGTGGTGGAGGTATCCGTTTCGGTGAAATGGAAAGAGATGCCATGCTTGCTCATGGCGCTGCATATCTACTGCATGACAGGCTACATAAAAGCTCTGATTATCACATTGCTGATGTCTGTTCCCTATGTGGAAGCATCCTCTCATCTTCAATGATTGAACCACACAAGCAGCTAGTCCAAAGAGTGGGTGGGCTACCTCCTGCTAGGGCTTCTAAAAAGGTATTCTGCCACTCTTGCCAGACTAGCAAAGGAATGGAAACGGTTGCCATGCCATATGTTTTCAGATATCTTGCTGCAGAATTAGCAGCTATGAATATCAAAATGTCCCTCCAGCTAAGTAATGCCACAGGAGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_22672.p1 GENE.S_Transcript_22672~~S_Transcript_22672.p1 ORF type:complete len:1179 (+),score=214.46,RNA_pol_Rpb2_6|PF00562.24|1.2e-107,RNA_pol_Rpb2_1|PF04563.11|3.1e-30,RNA_pol_Rpb2_3|PF04565.12|2.7e-26,RNA_pol_Rpb2_7|PF04560.16|1.7e+03,RNA_pol_Rpb2_7|PF04560.16|8.9e-23,RNA_pol_Rpa2_4|PF06883.8|1.7e-18,RNA_pol_Rpb2_2|PF04561.10|4.1e-11 S_Transcript_22672:326-3862(+)
MAKNKELDLEPLRALFQHHIDSFDHLIESGLESMLSNVKPIELRDPYKNTKLRIFIGKPLLYPPQKEARRGLPARALYPFECRQAKISYSGTFMAEVCFQYNDGPIIRERFNFGHFPVMFKSKLCNLRNASPETLVSHREEPLEMGGYFILNGLERLVRLLIMQKRNYPMSMVRSSFRVRREGYSDKAVVIRCVQEDQSSVTVRLYYLNNGSARLGFWIQGREFLLPVGVVLKALVDTTDHEIYVALTCSYNERYEGVKGAIGTQLVGERAKIILDELHGLSLLTRRQCIEHIGQYFHPVMDGLENESYSVVGEAVLNDFIFVHLGSNNHDKFNLLIFMVQKLFSLIDQTSVPDNPDSLQNQEVLQVGQLISIYLKDKLQEWLQKSRSLLNDEISKQSEHFDLANVQQVKKMLDKNPSRQIGTAIDNMLKTGRLATRSGLDLQQKAGFAIQADRLNFMRFLSNFRAVHRGSAFAGARTTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHLTCTCRITSYFDSQGVLKNFFKMRLSIIDVLVKLGMKPSLPKLVQAGPPEVLCVLIDGRVIGSVSTLEVEKVVNHLRRLKLSEVPAIPDDLEVGYVPLSFGGAYPGLFLFTTPSRFIRPVRNISIPPENNNDIELIGPFEQVYMEIRCPDGGDGGRGNNTPATHEEIHPTGILSVVANLTPWSNHNQSPRNMYQCQMAKQTMAFSSQAINFRTDQKGYHLQTPQSPIVRTESYSTYCIDEYPSGTNAIVAVLAYTGYDMEDAMILNKSSVEHGMCHANIYQTETIDLTDEGGRRARTEKAFKRSTLDKSTCSLIDGDGLPYIGQVLHPNDPYCTITNKLNSTMETRKLKGSELAFVDSVVIDGKHKAIPLDGHGFQKVNIRLRRPRNPIIGDKFSSRHGQKGVCSRLWPDIDMPFSHSTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLDGKFVDATPFSDSFKKADEEHGSESSTLVDDLGSMLTAHGFNKYGTEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQLTRQPIKGRKRGGGIRFGEMERDAMLAHGAAYLLHDRLHKSSDYHIADVCSLCGSILSSSMIEPHKQLVQRVGGLPPARASKKVFCHSCQTSKGMETVAMPYVFRYLAAELAAMNIKMSLQLSNATGV*

Click here to download the sequence:
Link to NCBI Protein BLAST