Transcript Information: S_Transcript_226852.p1


Annotated TAIR IDAT5G60250.1
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24252226-24254710 | Forward length=655
E-Value7.1E-141
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.975850555831
Replicate 210.45939653097
Replicate 39.8702791262233
Condition 2: 8 Hour
Replicate 116.507431764003
Replicate 217.358897370454
Replicate 315.078988490931
Condition 3: 24 Hour
Replicate 111.650604528317
Replicate 29.7790149949795
Replicate 313.54517199534


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_226852.p1 GENE.S_Transcript_226852~~S_Transcript_226852.p1 ORF type:complete len:540 (+),score=107.13,IBR|PF01485.17|3.3e+02,IBR|PF01485.17|7.2e+02,IBR|PF01485.17|1.4e-12,IBR|PF01485.17|1e-07,RVT_3|PF13456.2|4.6e-15 S_Transcript_226852:74-1621(+)
ATGGCTGCTTCTCTCTCTCTCCTCCCCTCTTCTTCTTCTTCACCCCCTAAACCATCTCTAAACAACAACAAAAACGATCGCGATGATCGTGACGGATCGTTCAATACCACCGATTTTCAGAGCAAGGAGCTCGATAAGTTGGAGCAAGAAAGGCGAGACCGTGAATTGTGCGAAATTGAGGCGAAGCGATTGAGAGAAGATCTTTTTCGCCGGATTCACGATCAGAAACTTGCGATTGATATTCAACGTTTGCCTGATGATGATTGGGAGGAGTTTGGGGATGAGTTTGAGCGGCCTTTTGGTGAAGGCTCTTCCACTTCTGTACCTAATGTTAATTTCAGGTTGTATTTTAAAGGGTTGGTTAGTGTAGAAAGAGTTGAAGGTTCAAAAGTGACTCTGACTGGATTAGGAGTTGCGATTTGTGATCCGAAAGGTAATGTGTTATTTAGGTTGAGCAAGCCGTTGGTGGGGATTGGGACGAGTCGTCAAGTAACTGAGATCAAGGCTTTGATTGAAGGCCTTGAAACAGCGATGGCTCTGGATTTAAGGCGCGTCACATTGCTTTGTGATTATCCTCCTGTTTACCAGTATGTTAGGCGGGTATGGCAACCAAAGTCGAAGAAGGTTGAGAAGCTAATGGCAAAAGTGGACCATCTTCAAAAACAATTTACGTACTTTCAGCCTTCTCTTGTTCCACGAAATAATATGCAGCTTGCATTTAAGCTTGCCAGAGATTCTATTGTCTCTCAGTTGTCTAGGCCTGCCGAGTCTAGCCATGTTAAGGATTTGAAGGAGACTTGTGTGATCTGCCTGGAAGAGACTGACCAGGATAAGATGTTCATCATTGACAGTTGTCTGCATAGATACTGTTTCTCTTGTATGAGGCAGCATGTCGAAGCAAAGCTACATAGTGGAATGTTACCCAAATGTCCTCATGAAAATTGTAAATCTGAGCTCAAGGTCATTAGCTGTGAGAAATTCTTGACACCGAAGCTAATTGAAATCCTGAAACAACGGATTAGAGAAGCATCTATTCCTGTTACGGAAAAAGTTTATTGCACATATCCTAGGTGCTCTGCGTTGATGTCAAAAAGTGAAATTTCTGACTTTGCAAGAATAGAAAATGTCAAGGAAAGAATGTTTGGAGCGAGGAAATGTATGAAGTGTTATGGCCTTTTTTGTGTCAACTGTAAAGTCCCATGGCATAAAAACATGACTTGCTTAGAGTATAAGAGGTCAAATCCATATCCACGGCTTGAAGAACTGAAGCTTCAGTCACTTGCAACAAGGAATTCGTGGTGCCAATGTGTGAAGTGCAAGCATATGATTGAACTTGTCGAAGGTTGCTACCACATGACTTGCAGATGTGGGTATGAGTTCTGCTACAACTGTGGAGCAGAGTGGAAGAACAAGAAGGCAACTTGTTCGTGTCCCCTTTGGGATGAAGAGAATATTTTGTTTGACGAGTCAGATTTTGAAGAAGAAGAAGATGAAGATGATGATGACTATGACGATGATGATTATTACTCTGACTCTGAGTCAGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_226852.p1 GENE.S_Transcript_226852~~S_Transcript_226852.p1 ORF type:complete len:540 (+),score=107.13,IBR|PF01485.17|3.3e+02,IBR|PF01485.17|7.2e+02,IBR|PF01485.17|1.4e-12,IBR|PF01485.17|1e-07,RVT_3|PF13456.2|4.6e-15 S_Transcript_226852:74-1621(+)
MAASLSLLPSSSSSPPKPSLNNNKNDRDDRDGSFNTTDFQSKELDKLEQERRDRELCEIEAKRLREDLFRRIHDQKLAIDIQRLPDDDWEEFGDEFERPFGEGSSTSVPNVNFRLYFKGLVSVERVEGSKVTLTGLGVAICDPKGNVLFRLSKPLVGIGTSRQVTEIKALIEGLETAMALDLRRVTLLCDYPPVYQYVRRVWQPKSKKVEKLMAKVDHLQKQFTYFQPSLVPRNNMQLAFKLARDSIVSQLSRPAESSHVKDLKETCVICLEETDQDKMFIIDSCLHRYCFSCMRQHVEAKLHSGMLPKCPHENCKSELKVISCEKFLTPKLIEILKQRIREASIPVTEKVYCTYPRCSALMSKSEISDFARIENVKERMFGARKCMKCYGLFCVNCKVPWHKNMTCLEYKRSNPYPRLEELKLQSLATRNSWCQCVKCKHMIELVEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWDEENILFDESDFEEEEDEDDDDYDDDDYYSDSESG*

Click here to download the sequence:
Link to NCBI Protein BLAST