Transcript Information: S_Transcript_22691.p1


Annotated TAIR IDAT5G12210.1
Annotated Gene NameRAB geranylgeranyl transferase beta subunit 1
Annotated Gene Symbol(s)AtRGTB1, RGTB1
Annotation TypeOrtholog
Chromosome Positionchr5:3947254-3949595 | Forward length=321
E-Value3.7E-190
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.16740827664
Replicate 214.298532605219
Replicate 314.073028579472
Condition 2: 8 Hour
Replicate 119.616386911927
Replicate 217.616856420133
Replicate 318.790625240628
Condition 3: 24 Hour
Replicate 117.810810929613
Replicate 219.031284285365
Replicate 316.2581122472


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_22691.p1 GENE.S_Transcript_22691~~S_Transcript_22691.p1 ORF type:complete len:287 (+),score=60.30,Prenyltrans|PF00432.17|7.8e+02,Prenyltrans|PF00432.17|7.7e-10,Prenyltrans|PF00432.17|3.4e-12,Prenyltrans|PF00432.17|3.2e-14,Prenyltrans|PF00432.17|3.9e-12,Prenyltrans|PF00432.17|2.1e-12,SQHop_cyclase_N|PF13249.2|39,SQHop_cyclase_N|PF13249.2|0.0015,SQHop_cyclase_N|PF13249.2|4.7e+02 S_Transcript_22691:646-1506(+)
ATGGAGCATCTTAGAATGAATGGTGCTTATTGGGGATTGACAACTCTGGATCTTTTGGGGAAGCTTCATGTTGTGGATCAAGATGAAGTTATATCATGGGTTATGGAGTGTCAACATGAATCTGGTGGATTTGGTGGTAATATTGGGCTTGATCCACATATTCTTTACACTCTCAGTGCAGTTCAAGTTTTAGCTCTTTTTGACAAGATAAATATTCTTGACATTGACAAGGTGTCAAACTATATTGCAGGATTGCAGAATGACGATGGATCCTTTTCTGGGGACATGTGGGGGGAAGTTGATACAAGGTTTTCATATATTGCGATATGCTGTCTGTCATTGCTATGCCAGTTGGACAGAATTGATGTGGAGAAGGCAGTAAACTACATAGTAAGCTGCAAAAACCTAGATGGTGGATTTGGGAGCACACCTGGTCGGGAGTCTCATGCTGGACAGATATTTTGCTGTGTGGGTGCCCTTGCCATAACGGGCTCTCTGCACCATGTTGACAAGGACCTTCTGGGTTGGTGGTTGTGTGAGCGTCAAGTCAAATCAGGTGGTCTAAATGGTCGACCAGAAAAGCTTCCAGATGTATGCTACTCATGGTGGGTGCTTTCTAGCCTGATTATGATCGATAGAGTTCACTGGATTGACAGAGAGAAGCTTGTGAAATTCATATTAGACTGTCAGGACTTGGAGAAAGGAGGAATCTCAGACAGGCCAGATGATGCTGTCGATGTTTTTCACACCTACTTCGGAGTTGCTGGTCTCTCACTTCTACAGTATCCCGGAGTGACAGCCATAGATCCTGCCTATGCTTTACCAGTGGATGTGGTGAACAGGATACTGCTTAGATCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_22691.p1 GENE.S_Transcript_22691~~S_Transcript_22691.p1 ORF type:complete len:287 (+),score=60.30,Prenyltrans|PF00432.17|7.8e+02,Prenyltrans|PF00432.17|7.7e-10,Prenyltrans|PF00432.17|3.4e-12,Prenyltrans|PF00432.17|3.2e-14,Prenyltrans|PF00432.17|3.9e-12,Prenyltrans|PF00432.17|2.1e-12,SQHop_cyclase_N|PF13249.2|39,SQHop_cyclase_N|PF13249.2|0.0015,SQHop_cyclase_N|PF13249.2|4.7e+02 S_Transcript_22691:646-1506(+)
MEHLRMNGAYWGLTTLDLLGKLHVVDQDEVISWVMECQHESGGFGGNIGLDPHILYTLSAVQVLALFDKINILDIDKVSNYIAGLQNDDGSFSGDMWGEVDTRFSYIAICCLSLLCQLDRIDVEKAVNYIVSCKNLDGGFGSTPGRESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWIDREKLVKFILDCQDLEKGGISDRPDDAVDVFHTYFGVAGLSLLQYPGVTAIDPAYALPVDVVNRILLRS*

Click here to download the sequence:
Link to NCBI Protein BLAST