Transcript Information: S_Transcript_227440.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.68946217367234
Replicate 30.96055917102086
Condition 2: 8 Hour
Replicate 11.3328368948208
Replicate 21.3982405399829
Replicate 31.998360712967
Condition 3: 24 Hour
Replicate 10.68265260908107
Replicate 21.1804068529348
Replicate 30.26272962921996


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_227440.p3 GENE.S_Transcript_227440~~S_Transcript_227440.p3 ORF type:complete len:96 (-),score=12.46,UBN2_3|PF14244.2|5.7e-27 S_Transcript_227440:7-294(-)
ATGAACTACATATCTTGGAAAAGAAATATGGAGATTGCCTTGGCTACAAAAAGGAAATTAGGATTTGTGAAGGGAACTGTACTGAGAAGTGATGATGATACAACAAAGGCTGATCAATGGGACACATGTAATTCTATGGTAATTGCTTGGCTCTTTAACTCTATGATTGAATCAATCAGACATTCTGTTTTGTATATAGAGTTTGCCTTTACTATGTGGATGCATCTTGAGAATCGTTTTACTGTAAGCAATGGAGCTCGAAAGTACAAAATCAATAGAGATATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_227440.p3 GENE.S_Transcript_227440~~S_Transcript_227440.p3 ORF type:complete len:96 (-),score=12.46,UBN2_3|PF14244.2|5.7e-27 S_Transcript_227440:7-294(-)
MNYISWKRNMEIALATKRKLGFVKGTVLRSDDDTTKADQWDTCNSMVIAWLFNSMIESIRHSVLYIEFAFTMWMHLENRFTVSNGARKYKINRDI*

Click here to download the sequence:
Link to NCBI Protein BLAST