Transcript Information: S_Transcript_227448.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3718041873804
Replicate 21.3647086324236
Replicate 30.38026259966187
Condition 2: 8 Hour
Replicate 11.9786444624144
Replicate 21.3838256890553
Replicate 32.85676308108
Condition 3: 24 Hour
Replicate 10
Replicate 20.9345901680968
Replicate 31.8201475343898


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_227448.p1 GENE.S_Transcript_227448~~S_Transcript_227448.p1 ORF type:3prime_partial len:97 (+),score=17.32,UBN2_3|PF14244.2|3.4e-20 S_Transcript_227448:310-597(+)
ATGTCGAGAAACACTAATATTCAGTACAGTGATCTACAAAATGCTTTGTTTCTTCATCCCTCTAATGGTCCTTCATCCATTACAATTGTAGAAAAACTTGTTGGAGCAATGAACTACATATCTTGGAAAAGAAATATGGAGATTGCCTTGGCTACAAAAAGGAAATTAGGATTTGTGAAGGGAACTGTACTGAGAAGTGATGATGATACAACAAAGGCTGATCAATGGGACACATGTAATTCTATGGTAATTGCTTGGCTCTTTAACTCTATGATTGAATCAATCAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_227448.p1 GENE.S_Transcript_227448~~S_Transcript_227448.p1 ORF type:3prime_partial len:97 (+),score=17.32,UBN2_3|PF14244.2|3.4e-20 S_Transcript_227448:310-597(+)
MSRNTNIQYSDLQNALFLHPSNGPSSITIVEKLVGAMNYISWKRNMEIALATKRKLGFVKGTVLRSDDDTTKADQWDTCNSMVIAWLFNSMIESIR

Click here to download the sequence:
Link to NCBI Protein BLAST