Transcript Information: S_Transcript_22794.p1


Annotated TAIR IDAT1G09520.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3071248-3072030 | Reverse length=260
E-Value3.7E-31
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.9938674534405
Replicate 28.0061646316744
Replicate 38.9403845280612
Condition 2: 8 Hour
Replicate 113.823106188945
Replicate 213.447897935791
Replicate 316.060694040318
Condition 3: 24 Hour
Replicate 111.134234244513
Replicate 211.677199316345
Replicate 39.3621993082702


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_22794.p1 GENE.S_Transcript_22794~~S_Transcript_22794.p1 ORF type:complete len:361 (+),score=47.82 S_Transcript_22794:1325-2407(+)
ATGAACAGAGATCTGCCACCACCACCACAGCAACCCTCACACACCTCCACCGCCGGCACTTCCGTCGCCGCAATCGCCGCCAACGGCTGCACAAACTGCTGCTCCGACGACCGCTGGATCCTCCACTACGTAAGAATCCGAAACCTTTACCGAAAACTCTGCACATCCTGCGTTCTAAAGCTCCACCCGACGTCGTTTTGCCCTATCTGCTACAATCTCCATGATCCGAACTCTCTCACCACAATCCCTAACCCTAGCTCAACAACGACGACGACGACAATCACAAACCCTAAGATCATCAAGTGCTTCAAGTGCAGTTCTTTTTCTCACACCTCTTGTCTCGCTCCTAATGGCCCTAAAACCCCTTACCTTTGCCCCCCTTGCTTCAACCCCAATTTGAAATTCTTCGACATCAAGAAACCCAAAAAGACCGAATGTTTGAACGGCGATCAAGAAGGCGGTGATCGGAAAAAGCAGGTGATTGATGAGAGGGGGTCGAAGGAGTTGTTGCTTGCGGCGAAAATATCGTCGATGTCGATGAATAGGGCGGTGGTGGTGGCTAGGGCTGAGGTGGAGAAGAAGGTTAAGGAAGCTGCATTGGCTAGGAAGAGAGCTAAGGAGGCTATTGATTATGTTACTTCGCTTTCAAATCGTATCCAGGCTGTTGGGGCTAAGCGTAGGGAGGTTGCTGAAGTGGCCGTGGCGGGAGTGGCGGCGGGTGCGGGTGCCCCTCCTCCGGTTTCTAGTGCGATGGTCGGGTTGAAGAGTGGGCAGGTCATGCCTGTGAAATTGGAGACTAAGAATGGTGTTGCAAAGGTCAATCCCAATGCTAATACTAATGGTGGTGGTAGTGTTAAAATTGAGAATAAGAACGGGCCGGTCGAAGTTGCGGGAGCGGGGGCAATGGTTCCTCCTCCGGTGGTTGCATCGGCGGTGCCGCCACATTTGCAGAACAATATAAATAATGGCATAAGTAATATCAGTACTAATAGTAATAATAATAGTAATCTGAATAGAGTTGGTGGTGGTAGAGGTGGAGGGAAGGAAGGTACAGGGGCAGCGTTGGCTGGGGCGTGCAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_22794.p1 GENE.S_Transcript_22794~~S_Transcript_22794.p1 ORF type:complete len:361 (+),score=47.82 S_Transcript_22794:1325-2407(+)
MNRDLPPPPQQPSHTSTAGTSVAAIAANGCTNCCSDDRWILHYVRIRNLYRKLCTSCVLKLHPTSFCPICYNLHDPNSLTTIPNPSSTTTTTTITNPKIIKCFKCSSFSHTSCLAPNGPKTPYLCPPCFNPNLKFFDIKKPKKTECLNGDQEGGDRKKQVIDERGSKELLLAAKISSMSMNRAVVVARAEVEKKVKEAALARKRAKEAIDYVTSLSNRIQAVGAKRREVAEVAVAGVAAGAGAPPPVSSAMVGLKSGQVMPVKLETKNGVAKVNPNANTNGGGSVKIENKNGPVEVAGAGAMVPPPVVASAVPPHLQNNINNGISNISTNSNNNSNLNRVGGGRGGGKEGTGAALAGACK*

Click here to download the sequence:
Link to NCBI Protein BLAST