Transcript Information: S_Transcript_228042.p1


Annotated TAIR IDAT1G72270.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:27199733-27211122 | Reverse length=2845
E-Value6E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.86546345480262
Replicate 21.0762336369519
Replicate 31.1995275501529
Condition 2: 8 Hour
Replicate 11.3870172563989
Replicate 20.18188494829046
Replicate 31.2130970181697
Condition 3: 24 Hour
Replicate 10.53280203635596
Replicate 20.92129315351006
Replicate 32.0505727158631


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_228042.p1 GENE.S_Transcript_228042~~S_Transcript_228042.p1 ORF type:3prime_partial len:123 (-),score=11.57 S_Transcript_228042:3-368(-)
ATGTCGCCTCGCCGAAGTCTTAGTCATCCTCGCGCCGACAGACTCACGCTGCTGCCCGATTGCCCCACTTCCTCTAATTGTTGGTTTGAAAGATTTCTCCTTTTTGCCTCAATTGAACAGGACCCCAGATGGGTTCAAACTTTTAGGATGTCAAAGCCCACTTTTTTACTCCTTAATGCTATTCTTTCCCACTATTTATCCTCTTCAATTCCCTCTATTTCCCCCAATTTTGCTCTTGGTGCTGCTCTTTATAGGCTTGCTCATAATGGGTCATTCTCTTCTGTTGGTAAAAGATTTGGGATTTCCTCACAAGATGCTTGTAGAGCTTTTTATGCTGTTTGTAAGATGGTTTGTGATCACTTGGGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_228042.p1 GENE.S_Transcript_228042~~S_Transcript_228042.p1 ORF type:3prime_partial len:123 (-),score=11.57 S_Transcript_228042:3-368(-)
MSPRRSLSHPRADRLTLLPDCPTSSNCWFERFLLFASIEQDPRWVQTFRMSKPTFLLLNAILSHYLSSSIPSISPNFALGAALYRLAHNGSFSSVGKRFGISSQDACRAFYAVCKMVCDHLG

Click here to download the sequence:
Link to NCBI Protein BLAST