Transcript Information: S_Transcript_228880.p1


Annotated TAIR IDAT2G13600.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:5671493-5673586 | Forward length=697
E-Value6.1e-322
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.82346839264975
Replicate 20.99298068331994
Replicate 30.44096556036738
Condition 2: 8 Hour
Replicate 11.9495785803286
Replicate 22.1711076738975
Replicate 32.2485071313272
Condition 3: 24 Hour
Replicate 10.3994141847788
Replicate 21.0519068664127
Replicate 30.70948085527753


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_228880.p1 GENE.S_Transcript_228880~~S_Transcript_228880.p1 ORF type:complete len:711 (+),score=138.59,PPR|PF01535.16|0.026,PPR|PF01535.16|0.00092,PPR|PF01535.16|7.8e-07,PPR|PF01535.16|3.8e+02,PPR|PF01535.16|0.23,PPR|PF01535.16|3.8e-08,PPR|PF01535.16|0.00065,PPR|PF01535.16|0.34,PPR|PF01535.16|8.6e-07,PPR|PF01535.16|3.2e+03,PPR|PF01535.16|0.055,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|2.4,PPR|PF01535.16|0.012,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|4.7,PPR_2|PF13041.2|0.87,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|5.1e-09,PPR_2|PF13041.2|3,PPR_2|PF13041.2|9.3e-11,PPR_2|PF13041.2|0.053,PPR_2|PF13041.2|0.021,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|4.3e-07,PPR_2|PF13041.2|4.3,PPR_2|PF13041.2|5.4,PPR_2|PF13041.2|2.4e+03,PPR_1|PF12854.3|0.49,PPR_1|PF12854.3|0.67,PPR_1|PF12854.3|0.0023,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|0.00016,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|0.025,PPR_1|PF12854.3|59,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|0.053,PPR_1|PF12854.3|0.69,PPR_1|PF12854.3|4.9e+03,PPR_3|PF13812.2|7.8e+03,PPR_3|PF13812.2|16,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|35,PPR_3|PF13812.2|6.1e+03,PPR_3|PF13812.2|7.2e+02,PPR_3|PF13812.2|0.00056,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.074,PPR_3|PF13812.2|11,PPR_3|PF13812.2|0.0054,PPR_3|PF13812.2|76,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|72,PPR_3|PF13812.2|15,PPR_3|PF13812.2|17,PPR_3|PF13812.2|23,DYW_deaminase|PF14432.2|1.2e+04,DYW_deaminase|PF14432.2|6.5e-08,TPR_19|PF14559.2|3.4e+02,TPR_19|PF14559.2|1.3e+04,TPR_19|PF14559.2|3.4e+02,TPR_19|PF14559.2|7.2e+02,TPR_19|PF14559.2|36,TPR_19|PF14559.2|8.1e+03,TPR_19|PF14559.2|4.9e+03,TPR_19|PF14559.2|54,TPR_19|PF14559.2|35 S_Transcript_228880:176-2308(+)
ATGATGGGATGGCCAAAAAAGCACCCTTTAAGCAATTTTTCAGAGACCTATACAATCTCCCGAGTCCCGAATTCATCACTCTTTGCTAAACTCTTGGATTCGTGCATCCAATCAAACTCAGTTCGCGATGGGCGAAGTGTTCATGCTAGAATACTCAAAACGCAGTTTGCCTCTGAGGTTTTTATTCACAACAGGCTCATGTATGCTAAATGTGGGTACATTGAAGATGCACGTAAAATGTTTGATAAAATGCCTCAAAGAAACACTTTCAGTTATAATGCAGTTTTGAGTGCGTTGACGAGATGGGGTTTTGTTGAGGAAGCTGTGGGGGTGTTTGGGTCCATTCCAGAGCGCGATCAGTGCTCCTGGAATTGTATGGTTTCTGGGTTTGCTCAACATGGTAGGTTTGGTGAGGCTGTTGAGTATTTTGTGGGGATGCAGAAAGAGGGGATTTTGGTTAATCAGTACTCTTTTGGGAGTGTTCTTAGTGCTTGTGCTGGGTTGGGGGATTTGAAAGTGGGGATTCAAGTTCATGGGTTGCTGTTGAAGGGGCTTTGTTTGATGATGGATGTGTATATGGGGTCTGCTCTTGTTGATATGTATGCTAAGTGTGGGGAAGTGACCTGTGCTCGACGAGTTTTTGAGGGGATGGCTGAAAGAAATAGAGTCACTTGGAATAGTCTCATTACTTGTTATGAGCAAAATGGTCCTGTTAGTGAGGCTGTTGAGATATTTAGAAAGATGATGGATCAAGGGGTGGACCCGGACGAGGTCACACTGGCGAGTGTGGTTAGTGCTTGCGCAACGTTAATGGCGTTAGGAGAAGGTAAGCAGATTCATGCTTTGGTTTTGAAAAATGAGAAGTTCAGGGATGACCTTATTTTAGGTAATGCTTTGGTTGATATGTATGCAAAATGTGGTAGAGTTAATGAAGCTAGATTCATCTTTGAAAGCATGCCATCTAGGAATGTAATAACTGAGACGTCCTTGGTAAGCGGCTATGCTAAAACCGCGAGCGTGGAGGCTGCAAACTTATTGTTTATGAAGATGATAGATAGGAACATAGTGTCTTGGAATGCACTTATGGCGGGATACACACAAAATGGAGACAATGAGAAGGCACTGAGCCTATTTTGCCAGTTGAAGAGGGAATCTGTTTGGCCCACCCATTATACTTTTGGGAATCTCCTCAATGCTTGTGCAAATCTCGCAGATATGCATCTTGGCATGCAGGCTCATACTCATGTATTGAAACATGGGTTTTGCTTCCGAGCTGGACCAGAACCTCACATCTTTGTGGGGAATGCTTTAATAGACATGTATATGAAATGTGGGTCAGTTGAAAATGCATTACTGGTGTTTCAAAATGTGGTAGAACGAGATCTTGTCTCATGGAATGCAATGATTGTAGGATATGCTCAAAATGGATATGGGATTGAAGCTCTTGAGATGTATAAGCAGATGATAGTATCTAATGAGGAACCAGACCATGTGACGATGATTGGAGTTCTATGTGCTTGTAGCCATGCTGGTCTTGTAGAAGAGGGCAGGCACTATTTCCGCTCAATGACAGAACTTCATGGTTTGCAACCATGGAAGGACCATTACACATGTATGGTTGATTTGCTTGGTCGAGCTGGATGCTTTGATGAAGCAAAACATTTAATTGAAACTATGCCAATGCAGCCTGATAATGTTGTATGGGCTTCTCTGCTTGCTGCTTGCAAAGTTCATCGGAATATTGAAATGGGGAAGTACGTGGCTGAGAAGCTATTGGAAATAGATCCTACTAACTCTGGTCCATATGTTCTGCTCTCAAACATGTACGCGGAGCTTGGAAGATGGAAGGAGGTTACTGGGGTTCGGAGGCTTATGGTGCAAAGGGGAGTTGTTAAGCAGCCAGGCTGTAGCTGGATTGAGATACAGAGCCGTGTGCATGTGTTCTTGGTTAAAGATGAAAGCCACCGCCAGAGAGAGGAGATCTACTTTGTCTTGAAAAGCCTTACCAAACAAATGAAAGTATCTGGCTATGTTCCTGCTACTGCAGACATAGAAATAGATGAGGAAGAGGGTGAGCATGAAGCATTTTCTGATTATTCAGTGGAAATGCAAGCCATTGCCTTTGTTGGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_228880.p1 GENE.S_Transcript_228880~~S_Transcript_228880.p1 ORF type:complete len:711 (+),score=138.59,PPR|PF01535.16|0.026,PPR|PF01535.16|0.00092,PPR|PF01535.16|7.8e-07,PPR|PF01535.16|3.8e+02,PPR|PF01535.16|0.23,PPR|PF01535.16|3.8e-08,PPR|PF01535.16|0.00065,PPR|PF01535.16|0.34,PPR|PF01535.16|8.6e-07,PPR|PF01535.16|3.2e+03,PPR|PF01535.16|0.055,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|2.4,PPR|PF01535.16|0.012,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|4.7,PPR_2|PF13041.2|0.87,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|5.1e-09,PPR_2|PF13041.2|3,PPR_2|PF13041.2|9.3e-11,PPR_2|PF13041.2|0.053,PPR_2|PF13041.2|0.021,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|4.3e-07,PPR_2|PF13041.2|4.3,PPR_2|PF13041.2|5.4,PPR_2|PF13041.2|2.4e+03,PPR_1|PF12854.3|0.49,PPR_1|PF12854.3|0.67,PPR_1|PF12854.3|0.0023,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|0.00016,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|0.025,PPR_1|PF12854.3|59,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|0.053,PPR_1|PF12854.3|0.69,PPR_1|PF12854.3|4.9e+03,PPR_3|PF13812.2|7.8e+03,PPR_3|PF13812.2|16,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|35,PPR_3|PF13812.2|6.1e+03,PPR_3|PF13812.2|7.2e+02,PPR_3|PF13812.2|0.00056,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.074,PPR_3|PF13812.2|11,PPR_3|PF13812.2|0.0054,PPR_3|PF13812.2|76,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|72,PPR_3|PF13812.2|15,PPR_3|PF13812.2|17,PPR_3|PF13812.2|23,DYW_deaminase|PF14432.2|1.2e+04,DYW_deaminase|PF14432.2|6.5e-08,TPR_19|PF14559.2|3.4e+02,TPR_19|PF14559.2|1.3e+04,TPR_19|PF14559.2|3.4e+02,TPR_19|PF14559.2|7.2e+02,TPR_19|PF14559.2|36,TPR_19|PF14559.2|8.1e+03,TPR_19|PF14559.2|4.9e+03,TPR_19|PF14559.2|54,TPR_19|PF14559.2|35 S_Transcript_228880:176-2308(+)
MMGWPKKHPLSNFSETYTISRVPNSSLFAKLLDSCIQSNSVRDGRSVHARILKTQFASEVFIHNRLMYAKCGYIEDARKMFDKMPQRNTFSYNAVLSALTRWGFVEEAVGVFGSIPERDQCSWNCMVSGFAQHGRFGEAVEYFVGMQKEGILVNQYSFGSVLSACAGLGDLKVGIQVHGLLLKGLCLMMDVYMGSALVDMYAKCGEVTCARRVFEGMAERNRVTWNSLITCYEQNGPVSEAVEIFRKMMDQGVDPDEVTLASVVSACATLMALGEGKQIHALVLKNEKFRDDLILGNALVDMYAKCGRVNEARFIFESMPSRNVITETSLVSGYAKTASVEAANLLFMKMIDRNIVSWNALMAGYTQNGDNEKALSLFCQLKRESVWPTHYTFGNLLNACANLADMHLGMQAHTHVLKHGFCFRAGPEPHIFVGNALIDMYMKCGSVENALLVFQNVVERDLVSWNAMIVGYAQNGYGIEALEMYKQMIVSNEEPDHVTMIGVLCACSHAGLVEEGRHYFRSMTELHGLQPWKDHYTCMVDLLGRAGCFDEAKHLIETMPMQPDNVVWASLLAACKVHRNIEMGKYVAEKLLEIDPTNSGPYVLLSNMYAELGRWKEVTGVRRLMVQRGVVKQPGCSWIEIQSRVHVFLVKDESHRQREEIYFVLKSLTKQMKVSGYVPATADIEIDEEEGEHEAFSDYSVEMQAIAFVG*

Click here to download the sequence:
Link to NCBI Protein BLAST