Transcript Information: S_Transcript_229172.p2


Annotated TAIR IDAT1G72500.1
Annotated Gene NameLOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: inter-alpha-trypsin inhibitor heavy chain-related (TAIR:AT1G19110.1); Has 1407 Blast hits to 1406 proteins in 307 species: Archae - 6; Bacteria - 522; Metazoa - 484; Fungi - 59; Plants - 110; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:27295336-27298556 | Reverse length=756
E-Value5E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.2454879555098
Replicate 20.89686136412662
Replicate 31.6493503814602
Condition 2: 8 Hour
Replicate 12.4272801986981
Replicate 21.2731946380332
Replicate 32.0795948882909
Condition 3: 24 Hour
Replicate 15.5056210423449
Replicate 22.9481380912322
Replicate 33.8960881601399


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_229172.p2 GENE.S_Transcript_229172~~S_Transcript_229172.p2 ORF type:5prime_partial len:123 (-),score=17.73,VWA_3|PF13768.2|2.4e-06 S_Transcript_229172:440-808(-)
AGTGAGTGGATGAGCTTAAAGTTAGTTGCTGGGGGAGATACAGACATTTTGCTTGCTGTGAATAAGGCACTAGAGTTGGTGTCAAACCAAAGCTACTTAATGACTTTTATTTTTCTCATAACTGATGGTGCTGTTGAAAATGAAAGAGATATTTGTAAGATTGTTAAAGATTGTTGCACTAGAAAAGCTGGATTACCTTCTCTTCGTATGTCTACCTTTGGCATAGGTTCATATTGTAATCACTACTTCCTGCGACTGCTAGCACAGATTGGGAGGGGCTATTATGATGTTGCTTATGAAGCAGATTCTGTTACCTCTCGACTGCAGAGGCTGTGCACAATGTCTGTCAGTTGTTCTTTCAAATATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_229172.p2 GENE.S_Transcript_229172~~S_Transcript_229172.p2 ORF type:5prime_partial len:123 (-),score=17.73,VWA_3|PF13768.2|2.4e-06 S_Transcript_229172:440-808(-)
SEWMSLKLVAGGDTDILLAVNKALELVSNQSYLMTFIFLITDGAVENERDICKIVKDCCTRKAGLPSLRMSTFGIGSYCNHYFLRLLAQIGRGYYDVAYEADSVTSRLQRLCTMSVSCSFKY*

Click here to download the sequence:
Link to NCBI Protein BLAST