Transcript Information: S_Transcript_231278.p1


Annotated TAIR IDAT5G35930.1
Annotated Gene NameAMP-dependent synthetase and ligase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:14067197-14074404 | Reverse length=1040
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2825542763942
Replicate 21.0822538767456
Replicate 31.2697236546369
Condition 2: 8 Hour
Replicate 11.1929004910617
Replicate 21.5209776613928
Replicate 31.4858723373524
Condition 3: 24 Hour
Replicate 11.1279630029567
Replicate 20.95570289779778
Replicate 31.3240488026782


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_231278.p1 GENE.S_Transcript_231278~~S_Transcript_231278.p1 ORF type:5prime_partial len:1162 (+),score=224.74,AMP-binding|PF00501.24|3.4e+03,AMP-binding|PF00501.24|1.5e-54,AMP-binding|PF00501.24|5.6e+03,PQQ_3|PF13570.2|5.2,PQQ_3|PF13570.2|0.00015,PQQ_3|PF13570.2|0.0016,PQQ_3|PF13570.2|0.0077,PQQ_3|PF13570.2|0.039,PQQ_3|PF13570.2|0.00094,PQQ_3|PF13570.2|9.7,PQQ_3|PF13570.2|3.7,PQQ_2|PF13360.2|1.1e-09,PQQ_2|PF13360.2|7.3e-10,PQQ|PF01011.17|1.6e+03,PQQ|PF01011.17|2.5e+03,PQQ|PF01011.17|0.24,PQQ|PF01011.17|0.0002,PQQ|PF01011.17|5.9e+03,PQQ|PF01011.17|0.28,PQQ|PF01011.17|0.0015,AMP-binding_C|PF13193.2|1.6e+04,AMP-binding_C|PF13193.2|1.6e-11 S_Transcript_231278:3-3488(+)
GAGGTAGAAATGGAAAACGAGGAGCACCAGCTCTCTCGTCCCCCATTATCCTCCTACTGCTGCATTTCCCAAATATTCCAAAGAGCTGCCTCCACTAACCCCAACGAAATAGCCATCATTCAAGCCACCAAACTCCACAAAAACCTTCTTCCTACTGAAACCAACAACAACGACAACAATAATGTTGAAGTTCATCATCTTAACCCTCCAGTCTATGAAGGAGACCAGTGTTACACTTTCTCTGACCTCTTATCTGCGGTTCATTCCTTCAGCAAAAGGCTTCATCATATTCTCAACGGTGGTAATGATCCCTCCTTAATCAAACCCACTTCAGGTAATGATTCTCAAAGAATTTTAAACTCTGAAACAAAGATACTTGGAGTTTATATGGTGCCTTCTACTGAATATGTGATTACAGTTCTTTCTATATTAAGGTGTGGTTGGGTTTTTCTTCCTTTAGACCCTTCTTGGCCTAAACAAAGAATCTTGTCAGTTATTTCATCTTCTAATGCTGATTTGGTTATTGGGTGTTTGAGTTCTGACAAAAAGAGTGGTGCCCATTTGCTTGATACATCTCATTGGCTTTTAGATTCTTGCAAAATCCCAGTTTTGTGTGTTTCTATTGATGGGATTCTTGGACAGGAATTTGGGGCTTTGGATTTGGTTTGGCCTTGTGAAAATAAACGTTCAAGGTTGTTTAGTTATTTGATGTATACTTCAGGGTCTACTGGGAAGCCTAAAGGTGTTTGTGGGACAGAAGAAGGGATTGTAAATAGGTTTATTTGGATGCAAGAATTGTACCCATTGGATAATGATGAAGTTTTGCTCTTTAAGACATCTATTAGCTTTGTTGACCATCTTCAAGAATTTCTAGCCCCTATGCTTGCAGGATGTACTTTGGTTATGCCCCCATTTTATGAGCTGAAGGAGAATTTGTTGGGCCTTGTTGATTGCTTGCATGATTATTCTATCACTAGGATAACAGCTGTCCCATCTTTGATGAGAGCACTTCTTCCTGCACTAGAAAGCTGGAATTTCGAGGGTGATCAGTGTTCCTTGAAGTTGTTGGTGTTGAGTGGTGAAGTTTTCCCCTTAACATTGTGGAGGAGTCTTTCTAGCATATTGCTAAAGACTTCTATCCTGAATATTTATGGAAGCACTGAGGTATCGGGTGATTGTACTTATTTTGACTGCAAACAGTTGCCAGAACTGCTCGAGGACAAGATGCTGAGCAGTGTTCCTATTGGTGTGTCTATCTCTAATTGTAAGGTTAAGCTTATTGAAGAAGAAGGGAAATGTAACAAAGGTGAGATATGTGTAACAGGTATTTGTCTCTCGAGTGGTTACTACTCTGAAGGTAATGTCACACCGTTGAACTGTGTGCAACTGACTGAAGATTCTGTGTCTGCGGATAGTGAGCAAAATAATGCAGTTTATTATAGAACAGGTGATTTTGCTAGAAGGCTTCCAAGTGGTGACTTGGTTTTTCTTGGAAGAAAAGACAGGACTGTTAAGGTCAATGGGCAACGTATATCACTTGAAGAGGTAGAGGATACATTAAGAGGAAACCCTGATGTGGCTGATGCTGCTGTAGTTCTCTGCAATCAGCGAGAAGGGCTTGCCTTGCTGGGAGCAGTTCTGGTCTTGAAAGATGAGTCATCTGAAATCATGAAATCAATAAAAAGTTGGATGGTCGATAGACTTCCTTCAGCAATGATTCCAAAGGAACTTATTTGTACTGATGCAATCCCTACGACTTCAACTGGAAAGTTTGATTACACATTGTTAGCTAGCTATTTCCCCCCAGTTGATGGTTCAAATGATGGTCATGTTCAACAAACCAAAACTATAGAACAAATCAAAAAAGCCTTTGCTAGTGCTTTGGATGTTGCAGAAGTAGGCAAAGACGATGACTTTTTCGTATTTGGTGGCGATTCTATCCTTGCGGCTTATGTTGCTCATATATTAAGAATTGATATGAGATTGGTATATATGTTCCCGACTCCTTCAAAGCTTCAGAAGGCTCTTATGGAAAAAGAAGGCATCGCTAGTGTGGATGGCCATATAAACTGGGAAACATTGCCGAAAACTCAAAAGGTTGATTTGCTTCATTCCTTGGATGCTAGAACAAATTATATTAGGAATAGGAAACTCAGAGAAACAACTCTTAGTGATGAGCACATTAGTCCTAAACACTTTAAGTTGGACAGTGGTGTATATTCGAATGCAAAAGTTACAACCAAAACAGTTAAGTTTCCTTGGGAACCCAACTTAGCATCCATCAAACTTGCGCTCTGCCGTTGCAACAAGATAATGTACCATAGTAACTGTGAGTTTGGTAATCTGCCGCACAAGGCTTGGGAATTTGATCTCCCAGGAAATAGCAAAGGCTCCTTGCAGGAAGTATGGAGAGTTCCTATGGACTCTTGTGTTGATGCATCACCACTAGTTACTTTTAAGGATGAGGAAATTTTAGTATTTATCGGATCTCACTCCCACAAGTTTCGTTGTGTTAATGCCAGAGATGGTTCTGTGATCTGGGAGATAAAACTAGAAGGTCGGATAGAATGTTCAGCAGTAGTGGACGGAGACTTCTCTCAGGTTGTAATTGGATGCTACCACGGAAAGATATACTTCATTGATATGGTGAAGGGGAACATTAATTGGACTTTCCAAACAGGTGGTGAAGTGAAGTCACAGCCTGCTGTAAACAAATGCAGGCATCTGGTATGGTGTGGATCACATGATCATAATCTGTATGGTCTCGACTATAGAAATTATTCCTGTGTTTGTCAATTTCCTTGTGGAGGAAGCATATTTGGTTCCCCTGCAATTGATGAGGTGCATGATTTACTATACATTGGTACAACCAATGGACGTCTGACATCTATAACTTTGAAGGCGTCAGCTTTTTCTGTACTGTGGTCGCTTGAGCTTGGAGCTCCAGTATTCGGATCTCTGTCTATCAGTTCTGATGGAAATGTCATATGTGGCTTAGTCAGTGGGGATGTTCTTTCTGTTGATCCAACAGGATCCACTGTTTGGAGGGTTAATACGGATGGTCCGATATTTGCTGGACCATGCATATCTAAGGCACTGAGTTCTCAGGTTCTCGTGTGCTCTAGTAATGGGAGGGTTTACTCATTTGATGAGGAAAAGGGAAAAATTATGTGGGAGTACAATGCAAAAGATCCAATCACATCTTCAGCATATGTTGATGAAAATATAAAGTTGGCGGATGATCCATCTATGCCCTCGGAAAGATTAGTTTGCATTTGCACCAGTTCAGGAAGCATTCACCTGCTTAAAGTAACCTGCGTTAGTACCCAAGGTGATGAGAAGCCAAAGGAAATGGTTGAGAAATTCGCACAACTTGATCTTCAAGGAGACATATTCTCGTCACCTGTCATGATTGGAGGTCAGATCATTGTAGGTTGCAGGGATGATTATTTGCATTGTATTGCAGCTCACTTTGAGAATGACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_231278.p1 GENE.S_Transcript_231278~~S_Transcript_231278.p1 ORF type:5prime_partial len:1162 (+),score=224.74,AMP-binding|PF00501.24|3.4e+03,AMP-binding|PF00501.24|1.5e-54,AMP-binding|PF00501.24|5.6e+03,PQQ_3|PF13570.2|5.2,PQQ_3|PF13570.2|0.00015,PQQ_3|PF13570.2|0.0016,PQQ_3|PF13570.2|0.0077,PQQ_3|PF13570.2|0.039,PQQ_3|PF13570.2|0.00094,PQQ_3|PF13570.2|9.7,PQQ_3|PF13570.2|3.7,PQQ_2|PF13360.2|1.1e-09,PQQ_2|PF13360.2|7.3e-10,PQQ|PF01011.17|1.6e+03,PQQ|PF01011.17|2.5e+03,PQQ|PF01011.17|0.24,PQQ|PF01011.17|0.0002,PQQ|PF01011.17|5.9e+03,PQQ|PF01011.17|0.28,PQQ|PF01011.17|0.0015,AMP-binding_C|PF13193.2|1.6e+04,AMP-binding_C|PF13193.2|1.6e-11 S_Transcript_231278:3-3488(+)
EVEMENEEHQLSRPPLSSYCCISQIFQRAASTNPNEIAIIQATKLHKNLLPTETNNNDNNNVEVHHLNPPVYEGDQCYTFSDLLSAVHSFSKRLHHILNGGNDPSLIKPTSGNDSQRILNSETKILGVYMVPSTEYVITVLSILRCGWVFLPLDPSWPKQRILSVISSSNADLVIGCLSSDKKSGAHLLDTSHWLLDSCKIPVLCVSIDGILGQEFGALDLVWPCENKRSRLFSYLMYTSGSTGKPKGVCGTEEGIVNRFIWMQELYPLDNDEVLLFKTSISFVDHLQEFLAPMLAGCTLVMPPFYELKENLLGLVDCLHDYSITRITAVPSLMRALLPALESWNFEGDQCSLKLLVLSGEVFPLTLWRSLSSILLKTSILNIYGSTEVSGDCTYFDCKQLPELLEDKMLSSVPIGVSISNCKVKLIEEEGKCNKGEICVTGICLSSGYYSEGNVTPLNCVQLTEDSVSADSEQNNAVYYRTGDFARRLPSGDLVFLGRKDRTVKVNGQRISLEEVEDTLRGNPDVADAAVVLCNQREGLALLGAVLVLKDESSEIMKSIKSWMVDRLPSAMIPKELICTDAIPTTSTGKFDYTLLASYFPPVDGSNDGHVQQTKTIEQIKKAFASALDVAEVGKDDDFFVFGGDSILAAYVAHILRIDMRLVYMFPTPSKLQKALMEKEGIASVDGHINWETLPKTQKVDLLHSLDARTNYIRNRKLRETTLSDEHISPKHFKLDSGVYSNAKVTTKTVKFPWEPNLASIKLALCRCNKIMYHSNCEFGNLPHKAWEFDLPGNSKGSLQEVWRVPMDSCVDASPLVTFKDEEILVFIGSHSHKFRCVNARDGSVIWEIKLEGRIECSAVVDGDFSQVVIGCYHGKIYFIDMVKGNINWTFQTGGEVKSQPAVNKCRHLVWCGSHDHNLYGLDYRNYSCVCQFPCGGSIFGSPAIDEVHDLLYIGTTNGRLTSITLKASAFSVLWSLELGAPVFGSLSISSDGNVICGLVSGDVLSVDPTGSTVWRVNTDGPIFAGPCISKALSSQVLVCSSNGRVYSFDEEKGKIMWEYNAKDPITSSAYVDENIKLADDPSMPSERLVCICTSSGSIHLLKVTCVSTQGDEKPKEMVEKFAQLDLQGDIFSSPVMIGGQIIVGCRDDYLHCIAAHFEND*

Click here to download the sequence:
Link to NCBI Protein BLAST