Transcript Information: S_Transcript_23154.p1


Annotated TAIR IDAT5G48330.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19585989-19587729 | Forward length=455
E-Value6E-112
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.470316136191
Replicate 26.2575748160203
Replicate 35.2847606321429
Condition 2: 8 Hour
Replicate 19.7273710218501
Replicate 29.4851405051472
Replicate 38.0401881317035
Condition 3: 24 Hour
Replicate 18.1758628268891
Replicate 26.8256508548648
Replicate 37.0798721137168


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_23154.p1 GENE.S_Transcript_23154~~S_Transcript_23154.p1 ORF type:3prime_partial len:342 (+),score=75.56,RCC1|PF00415.14|15,RCC1|PF00415.14|1e-10,RCC1|PF00415.14|0.0068,RCC1|PF00415.14|1.1,RCC1|PF00415.14|0.0001,RCC1|PF00415.14|0.99,RCC1|PF00415.14|1.5e-10,RCC1_2|PF13540.2|3.6,RCC1_2|PF13540.2|0.0044,RCC1_2|PF13540.2|0.00044,RCC1_2|PF13540.2|0.0021,RCC1_2|PF13540.2|4.6e-05,RCC1_2|PF13540.2|1.8e+02 S_Transcript_23154:157-1179(+)
ATGTCAGTTGCTTTCAGACAATCATGGAATGAGCCAAAGCAAGTGGAAGGACTAAAAGATGTAAAAGTTCGAGCTGCATTTGCATCTGGTGTTATTTCTGTTGCCATTGATGATGTTGGATCTATGTGGACATGGGGACGGTCCAAGCGTGGGCAGCTTGGGCTTGGGAATGGAATCACCGAGGCTGTTGTACCGACAAGAGTTGAAGCCCTTGCACGAGAAGATATAGCCAAGGTTTCACTAGGTTGGGGTCACGTGCTTGCACAAACTGTTGACGGAAAATTGTATGGATGGGGTTACTCAGCAGATGGTAGAGTAGGACGACTTGGAGACACTGTAAAGTCATCACCATTGGATTCAAGAGCAGAGCTACCCAGAAGTCATGAAATTAATACTAATGAGGCCCTACAAATTGCTGAGAAGCTTGTCTTAGAAAGCATGGACAAGGAAAAGGACATGCCAATTGCCTGGGAACCTTACTCAATAGATGAAGTGCAGTCCATTGCCGTCACTGATGTTTCCTGTGGCCTTGATCATTCTTTAATCATTTGCCGTGATGGCACCACGCTAAGTGGTGGGAGTGACACATATGGTCAGTTGGGAAGAGAGAAACAAGATATAGGCCTTTTTCCCGTTGACATAGACTTTTGTCCATCGTCTATTGCCTGTGGGCTCGGACACTCTATAGCAATCTGTACAATGCCAGCTTCAGACGTTGACAATGATTCTAGAAAAGTCATTGTCTCTTGGGGCTGGAACCAGTGCTCTCAGCTAGGAAGAGCAGGGCCAGAGAGCAAAGCTTTGGTGGTGGAAGGTTTGATTGAGGAGATACCGGCAGCACTTTCTGCTGGTCGTGTGCATTCACTTTGTGTCACTGCAAACGGGGAGCTGTGGTCTTGGGGCTGTGGTAAAAATGGTAGGCTTGGTTTAGGCTGCTCCTTTGACGAACCAGAGCCTGTCCTTGTCGATTGTGGAGGTCATAGAGTTGTCCAAGCCGCGGCTGGCTTTGATCACAATCTGCTC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_23154.p1 GENE.S_Transcript_23154~~S_Transcript_23154.p1 ORF type:3prime_partial len:342 (+),score=75.56,RCC1|PF00415.14|15,RCC1|PF00415.14|1e-10,RCC1|PF00415.14|0.0068,RCC1|PF00415.14|1.1,RCC1|PF00415.14|0.0001,RCC1|PF00415.14|0.99,RCC1|PF00415.14|1.5e-10,RCC1_2|PF13540.2|3.6,RCC1_2|PF13540.2|0.0044,RCC1_2|PF13540.2|0.00044,RCC1_2|PF13540.2|0.0021,RCC1_2|PF13540.2|4.6e-05,RCC1_2|PF13540.2|1.8e+02 S_Transcript_23154:157-1179(+)
MSVAFRQSWNEPKQVEGLKDVKVRAAFASGVISVAIDDVGSMWTWGRSKRGQLGLGNGITEAVVPTRVEALAREDIAKVSLGWGHVLAQTVDGKLYGWGYSADGRVGRLGDTVKSSPLDSRAELPRSHEINTNEALQIAEKLVLESMDKEKDMPIAWEPYSIDEVQSIAVTDVSCGLDHSLIICRDGTTLSGGSDTYGQLGREKQDIGLFPVDIDFCPSSIACGLGHSIAICTMPASDVDNDSRKVIVSWGWNQCSQLGRAGPESKALVVEGLIEEIPAALSAGRVHSLCVTANGELWSWGCGKNGRLGLGCSFDEPEPVLVDCGGHRVVQAAAGFDHNLL

Click here to download the sequence:
Link to NCBI Protein BLAST