Transcript Information: S_Transcript_232581.p1


Annotated TAIR IDAT3G10650.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:3325562-3330819 | Reverse length=1309
E-Value3E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4006842755358
Replicate 20.96766620866293
Replicate 31.6177838669825
Condition 2: 8 Hour
Replicate 10.93532413671636
Replicate 21.7661985768205
Replicate 31.1218867160516
Condition 3: 24 Hour
Replicate 12.1078396350573
Replicate 21.1928321882288
Replicate 31.3274760213219


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_232581.p1 GENE.S_Transcript_232581~~S_Transcript_232581.p1 ORF type:internal len:114 (+),score=27.65 S_Transcript_232581:1-339(+)
GGTGGAGCCGGTGGGGCATTCCGGAGGAGGCCGTTCAGGAGGGCTCAAGCGACGCCGTACGATCGGCCCCCAACCGCCTTACGACCTGCTCAAGCGGCGGCGGCGGCGGCTGAGAGAAACAATTGGTTCTCATCGAAGTTTCTGGATCCTGCTTCCAGGCTTATCACTGCCGGTGCTCATAAGCTCTTCGCTTCTGTCTTTCGTGGACGTCTTTTACCCCCTCCTCCTCCTCAGCCACCTCAGCACCCTCCAGATGAGAGCACAGAGATAAGGGATGTGCAGCCAGAAGCCACACCTGTTGTGGTCCCTTCTATTGCCAGGGAGCCAACCATTGGTGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_232581.p1 GENE.S_Transcript_232581~~S_Transcript_232581.p1 ORF type:internal len:114 (+),score=27.65 S_Transcript_232581:1-339(+)
GGAGGAFRRRPFRRAQATPYDRPPTALRPAQAAAAAAERNNWFSSKFLDPASRLITAGAHKLFASVFRGRLLPPPPPQPPQHPPDESTEIRDVQPEATPVVVPSIAREPTIGG

Click here to download the sequence:
Link to NCBI Protein BLAST