Transcript Information: S_Transcript_232892.p1


Annotated TAIR IDAT5G43820.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:17618948-17620588 | Forward length=546
E-Value7E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.95046432982787
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_232892.p1 GENE.S_Transcript_232892~~S_Transcript_232892.p1 ORF type:internal len:84 (+),score=25.22,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|4.8e-08,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|6.2e+03,PPR_1|PF12854.3|14,PPR_1|PF12854.3|4.8e-08,PPR_1|PF12854.3|20,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.0017 S_Transcript_232892:3-251(+)
GAGAAAGTGGCTTTTGATTGTGCGAGTTATAATGTGGTGATTGGTGGGTGGTCAAGATTAGGTTGGATGAGTGAGATGGAGAAGTGTCTGAAAGTGATGGTGGAAGATGGGTTTAGAGCGGATTGTGAGACATATAGTTGTCTTGTAGAGGGTTTGGGTAGAGCTGATCGGATTGATGATGCTGTTAAGATTTTTGAAAGCATGGACAGTCAAGAGCTTCAGCCTGATACATGTGTTTATAATGCCATG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_232892.p1 GENE.S_Transcript_232892~~S_Transcript_232892.p1 ORF type:internal len:84 (+),score=25.22,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|4.8e-08,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|6.2e+03,PPR_1|PF12854.3|14,PPR_1|PF12854.3|4.8e-08,PPR_1|PF12854.3|20,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.0017 S_Transcript_232892:3-251(+)
EKVAFDCASYNVVIGGWSRLGWMSEMEKCLKVMVEDGFRADCETYSCLVEGLGRADRIDDAVKIFESMDSQELQPDTCVYNAM

Click here to download the sequence:
Link to NCBI Protein BLAST