Transcript Information: S_Transcript_23343.p1


Annotated TAIR IDAT1G52380.1
Annotated Gene NameNUP50 (Nucleoporin 50 kDa) protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19509979-19511301 | Forward length=440
E-Value7.7E-119
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 134.691948038717
Replicate 231.419776200211
Replicate 331.122117141076
Condition 2: 8 Hour
Replicate 134.130144770947
Replicate 233.358024311021
Replicate 331.735871322595
Condition 3: 24 Hour
Replicate 129.93919299827
Replicate 229.189775177572
Replicate 330.288972968644


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_23343.p1 GENE.S_Transcript_23343~~S_Transcript_23343.p1 ORF type:complete len:448 (+),score=157.47,Ran_BP1|PF00638.14|8.1e-17,NUP50|PF08911.7|1.9e-16,NUP50|PF08911.7|1.6e+04 S_Transcript_23343:338-1681(+)
ATGGCGGATGAAAATCAGCCTTCAAAGAAAAGAGCTGCTGGTAGAGAGTTATCTCGAGACAATCCTGGACTTGATGATGACGAAGATGTTCCACAGGAGATGGGAACTTTCAAGAAGGCAAGCGATGAAGTGCTGGCTGGTCGAAGAATAGTGAAAGTCCGTCGTCAGCAAACATCTTCAACGCCCTCTGCTCCCTCATCAAATCCATTTGCAGGGATCAGTTTGGTCCCTTCTAACCCCACTGCTATCCCTGCCAATGCTAATACTGAAGGGCAGGCTGCTGAAGACAAAATAGCTGGTGAAGATCCAGATACAAAAGATGAAACAAACTCAGAGGCTGAGGTGGAAAGTAAAGAACCAGAGGAGAAACTTGGAGAGGCTGCAGTAGAATCTAATGAAGATAAGGAAAAAGAAGTGCCTGCTGACCAAGCTGCTGATGCTGCTAATACTTCTGAAAAGGAATCAATTGATGAACCTGCTCAAAATGATAAAGCAGATGCTGGTGATACTGCTAAAAAGGACACTGAGACCGAGTCAACTGATAAGAAAGAAGGTGATGGCAATGCTGAGAAAACAACTGAAGCTGAGCCTGCTGGTGATGAAGAAGCTGAAGGCGACAAGACTGAGAACAATGACAAGGGACAGGACGAAAAACCTGATGGTAATGGTAGTGTTGCCGGTGGCTCCTTGAGTTCATTCCAGCAACTTTCAAACAGCCAAAATGCATTCACTGGACTCTCTGGGACTGGATTTTCCAGCTCCACATTTTCATTTGGGTCACTTCAAAAAGATGGGTCTCCTTCACAGTCATCCCGTCCAACCTTCAGTTTTGGCACTCCTACTAATGGCAGTACACCTCTTTTTGGGACATCAGGGTCATCTCTGGGCAGCAAGAGTGAGGGAAGTGCATTCCACGCTATGCCAGAGGTGCCGAGGGAAACAGGGGAAGAGAATGAAGAAACAGTATTCTCTGCTGATTCAGCACTGTTTGAGTTTTTTGATGGTGGGTGGAAAGAACGTGGGAAGGGAGAGGTGAAAGTGAATGTACTAAAGGGCGAGACCCAGAAAGCCAGGTTGGTAATGCGTGCCAAGGGGAACTTGAGGTTGATTTTGAACGCGAGTCTATTCCCAGATATGAATCTTACCAAGATGGACAAGAAAGGTATCACCTTTGCCTGTGTCAATATCGCCAACAAGGGGAAGGACAGCCTATCAATGTTCGCTTTGAAGTTCAAAGATGTTTCGATTGTCGAGGAGTTTTCTTCAGCAGTTTCAGCACACAAGGATAAACCAGCTGCAGCTTTAAAGACACCAGAAAATTCACCAAAGGTAGCAGACAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_23343.p1 GENE.S_Transcript_23343~~S_Transcript_23343.p1 ORF type:complete len:448 (+),score=157.47,Ran_BP1|PF00638.14|8.1e-17,NUP50|PF08911.7|1.9e-16,NUP50|PF08911.7|1.6e+04 S_Transcript_23343:338-1681(+)
MADENQPSKKRAAGRELSRDNPGLDDDEDVPQEMGTFKKASDEVLAGRRIVKVRRQQTSSTPSAPSSNPFAGISLVPSNPTAIPANANTEGQAAEDKIAGEDPDTKDETNSEAEVESKEPEEKLGEAAVESNEDKEKEVPADQAADAANTSEKESIDEPAQNDKADAGDTAKKDTETESTDKKEGDGNAEKTTEAEPAGDEEAEGDKTENNDKGQDEKPDGNGSVAGGSLSSFQQLSNSQNAFTGLSGTGFSSSTFSFGSLQKDGSPSQSSRPTFSFGTPTNGSTPLFGTSGSSLGSKSEGSAFHAMPEVPRETGEENEETVFSADSALFEFFDGGWKERGKGEVKVNVLKGETQKARLVMRAKGNLRLILNASLFPDMNLTKMDKKGITFACVNIANKGKDSLSMFALKFKDVSIVEEFSSAVSAHKDKPAAALKTPENSPKVADS*

Click here to download the sequence:
Link to NCBI Protein BLAST