Transcript Information: S_Transcript_23388.p1


Annotated TAIR IDAT2G41700.1
Annotated Gene NameATP-binding cassette A1
Annotated Gene Symbol(s)ABCA1, AtABCA1
Annotation TypeOrtholog
Chromosome Positionchr2:17383239-17396110 | Reverse length=1882
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 126.669927441031
Replicate 233.707695061936
Replicate 334.173305096083
Condition 2: 8 Hour
Replicate 137.336538983045
Replicate 235.136962275335
Replicate 330.93647614969
Condition 3: 24 Hour
Replicate 138.456340348148
Replicate 228.941808579849
Replicate 330.010186524804


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_23388.p1 GENE.S_Transcript_23388~~S_Transcript_23388.p1 ORF type:complete len:1870 (+),score=339.90,ABC2_membrane_3|PF12698.3|6.4e-20,ABC2_membrane_3|PF12698.3|1.7e-45,ABC_tran|PF00005.23|1e-28,ABC_tran|PF00005.23|2.7e-26,AAA_21|PF13304.2|2e-08,AAA_21|PF13304.2|1.1e-08 S_Transcript_23388:272-5881(+)
ATGGGCGAATTCAGGCGCCAGTTGAAGGCGATGCTTCGCAAGAACTGGCTGCTCAAAATCCGTCATCCTTATGTCACTTTTGCTGAGATTTTTCTTCCAGCAGTTGTGATGCTGATGTTAATGGCTGTGCGAACGCAAGTTGACACACGTGTCCACCCTGCCCAGCCGTATATCCGGAAAGATATGCTAGTTGAGGTGGGTAAGGGCGATAAATCTCCTCCCTTAAACCAGATCCTGGAGCTCTTGGTGGCCAGTAACGAATATTTGGCTTTTGCACCTGATTCAAACAAGACAAGAGCAGTTGTTAGTTTGATGTCAATGCAATATCCTTTATTGAAGGTGGTCTCTAGATTCTATAAGGATGAAGTGGAACTTGAAACTTACATTCGTTCAGATTCCTATGGTACATGTGACCAAGTGAAGAACTGTTCAAATCCCAAACTTAGAGGGGCAGTGGTATTTCACAGTCAAGGTCCTGAGTTATATGACTACAGTATACGTCTTAACCACACTTGGGCTTTCTCAGGATTTCCTGACGTCAAAACAATCATGGATGTTAATGGTGCTTATGTCAATGATTTGGAGCTGGGTGTGAATCCTGTTCCTATTATGCAGTATGGCTTTAGTGGCTTCTTGACTCTTCAACAAGTTTTGGATTCCTTTATAATATTTGCTGCACAGCAGAGTGGTACTGGCATAAACTCTGAAGATTCTACTGTGCCTATGTCAGCATCATCTGACAAACCATCCTTGCTGATGCTTCCTTCCATGAAGTTCATTCCATCAACTATTAGGCTTGTCCCCTTTCCGACGCGTGAGTACACTGATGATGAGTTCCAATCCATTATCAAGAAAGTCATGGGAGTGTTGTACCTGCTGGGGTTTCTGTATCCAATATCTCGACTCATAAGTTATTCTGTGTTCGAAAAGGAGCAGAAAATCAGGGAAGGACTTTACATGATGGGCCTTAAAAGTGAGATTTTGCATATCTCATGGTTCATAACATACACCTTACAGTTTGCAGTTTCATCTGGAGTTCTTACAATCATCACAATGTGCTCCCTTTTTGAGTACAGTGATAAGACACTGGTGTTTACATACTTTTTTTTCTTTGGCCTGAGTGCAATGACTCTTTCTTTCTTAATTTCTACATTTTTCACGAGGGCTAAAACAGCTGTGGCAGTTGGAACACTTTCTTTTCTAGGAGCCTTTTTCCCCTATTACACAGTCAATGATCCAGATGTTCCAATGGTACTGAAGGCTACTGCATCATTGCTTTCTCCCACAGCCTTTGCATTGGGATCAATTAACTTTGCTGATTATGAGAGGGCACATGTTGGGTTACGTTGGAGCAATATATGGCGTGAATCATCTGGAGTGAATTTTCTTCTCTGTCTAAGCATGATGGTTTTTGACGCACTACTATATTGTGTCATTGGTGTCTACCTGGATAAGGTGCTTTCCAAAGAAGGTAATGTACGTTGTTTTTGGGATTTTCTACCCAAGGGTCTCTGGCAAAAGAAAGATAGAATTAAGCCTCATGCTTCTGGTTCTGGAATGAAATTGGAGGGTATAAGCTGGGAAATGAAACAGCAAGAAGTTGAGGGCAGGTGCCTCCAGATAAGGAATCTTAGTAAAACATACACTTCAAAGAAAGGGAATTGCTGTGCAGTTAACTCATTACAGCTGACTTTGTATGAACATCAGGTTCTTGCTCTTCTAGGACATAATGGAGCTGGTAAGAGCACAACCATTTCTATGCTCGTAGGACTCATTCCTCCGACTTCTGGTGATGCTTTGGTTTTCGGGAGAAATATTTTGACAGATATGAATGATATTCGCAAGGACTTGGGGGTGTGCCCTCAGAGTGATATCCTCTTCCCAGAGCTAAGCGTGAAAGAGCATTTGGAATTGTTTGGGATATTAAAAGGCGTGAAGGAAGAGGCGCTTGAGAGTGCTGTCACCAAAATGATTGAGGAAGTTGGTCTGGCTGACAAAGTCAACACTGTTGCAAGTGCCTTGTCTGGTGGCATGAAAAGGAAACTTTCCCTGGGAATCGCCCTCATAGGAAACAGTAAGGTTATTATTCTCGATGAACCTACCAGTGGAATGGATCCTTATTCAATGCGCTTGACATGGCAGCTGATTAAAAAAATTAAGAAAGGAAGGATAGTATTACTGACCACACATTCAATGGATGAAGCTGAAGCACTAGGAGATCGTATAGCTATCATGGCAAACGGCTCTTTGAAATGTTGTGGAAGCTCCCTCTTCCTGAAGCATCAATATGGGGTTGGTTATACCCTTACTTTAGTGAAGTCTGCTGCAGGTGCCTCTTTAGCTGCTGATATTGTTCGTCAGCATATTCCATCAGCCACAGTAGTGAGTGAGGTGGGTACAGAGATATCTTTTAAGCTTCCTTTGGCATCATCATCTTGCTTTGAGAGTATGTTCCAAGAAATTGAAAGCTACATGAAGAGTTCAGTCTCTAACACTGAAGCAGGCGCAATTGAGAATGAGTCTCCTGGGATTGAAAGTTATGGTATCTCTGTCACAACATTGGAAGAGGTATTCTTGAGAGTTGCTGGATGTGACTTTGATGAAATTGAGTGTATAGAACACAAAACATCACTCTCGGATCCTATGCTCAGTCAAGCACCTGGATATCAGGCATCTAAAAAAGGCTTTTCTGCAAAGCTTTGCACAAGTTGCTACAACTTCCTTATGTTAATGTGTGTTATAGTCGGGAGAAGCTGTGAGTTCTTCTTTGCTGCAATTTGGTGTTTTATAAACTTTGTGGGGACACAATGTTGCTGTACTGCTGTTATTTCAAGGTCTGATTTTTGGCAACATTCAAAGGCTTTACTGAAAAAGAGAGCAATATCTGCTAGGAGGGATCAGAAAACAATTGTTTTCCAGCTTTTCATTCCAGCAGTCTTTTTGTTTGCTGGGCTTCTTTTCCTTCAACTCAAGACACACCCTGATCAGCAGTCTGTAACTTTTACAACTTCAAACTTTAATCCTCTCTTGCATGGTGGAGGTGGTGGTGCTCCGATTCCGTTTGATCTATCCTATTCTATCTCACAAGAGATCGCCTCATATATAGACGGTGGGTGGATTCAAGAGTTCAAACCAAGTACCTACAGATTCCCAGACTCAGAAAAGGCATTAGCAGATGCCATAGAAGCTGCTGGACCAACTTTGGGACCACGATTACTTTCAATGAGTGACTTTCTGATGTCTAGCTTAAAAGAATCATATCAGTCAAGGTATGGTGCAATTGTAATGGACAATCAGAGTGATGATGGAACTCTGGGGTATACAGTATTACACAACAACTCCTGCCAGCATGCTGCTCCAACTTTTATCAATTTGATGAATTCAGCTATCCTTCGGCTTGCTACCTCTGACAGAAATATGTCAATTCGAACACGTAATCATCCTCTACCGTTGACCAACAGCCAACACCTGCAACGTCATGATTTGGATGCATTCTCTGCTGCTATTATCATTTCTATAGCTTTCTCATTTATTCCTGCTTCATTTGCTGTTCCTGTAGTAAAGGAGCGTGAAGTAAAAGCTAAGCATCAGCAGCTACTTAGTGGGGTGTCTATATTATCATACTGGACTTCCACCTACTTGTGGGACTTCTTCAGCTTCCTATTACCTTCATCATTTGCAATTATTCTTTTCTACATATTTGGTCTGGAACAGTTTGTGGGAACAGGAGGCTTCTGCCCAACTGTAATTATGTTTATGGGGTACGGATTAGCAATTGCATCTTCAACATACTGTCTAACATTTTTTTTCTCTGATCACACAGTGGCCCAGAATGTGGTTCTACTGGTCCATTTTTTCACTGGACTCATTCTTATGGTAATCTCATTTATAATGGGTCTGATGGAAACAACTGCAAATGTAAATTCTTACCTGAAGAACATTTTCAGGCTATCCCCAGGATTCTGCTTTGCTGATGGTCTTGCATCACTTGCTCTTTTACGCCAAGGGATGAAAGATAAATCCAGTAATCAGGTTCTTGACTGGAATGTTACGGGTGCCTCAATTTGCTATTTGGGTGTTGAGAGCATCATCTATTTTTTATTAACACTTGGACTTGAAGTCTTACCCCCTCACAAAGTAGTACCCAGTACACTTGATTGTTGCTGGAGAAGGCTACAGAGTCTCTGTCGCGGGAACAGCAGCAGTGTCTTGGAGCCTCTATTGGATTCATCTTCAGATGCTATGGTTCTTGGCCTTGATGAGGATATAGATGTAAGAGTGGAACGAAATCGGGTGCTATCCGGTGCTGCAGATAGGGCGATTATATACTTACGTAATCTGCGGAAGGTTTACCCTGGTGGGAAGCTTCAAAGTCCAAAAGTTGCAGTTCATTCACTTACTTTTGCTGTCCATGAAGGAGAATGTTTTGGTTTTCTAGGAACAAATGGAGCTGGAAAGACCACCACATTGTCAATGCTATCTGGAGAAGTATGTCCTTCTGAGGGGACTGCCTATATATTTGGGAAAGACATATGTGCAAATCCAAAGGCGGCTCGCCAGCATATTGGGTACTGTCCCCAGTTTGATGCTTTGCTAGAACATTTGACTGTCAGGGAGCATCTTGAGCTTTATGCAAGAATCAAAAGAGTTCCTGATTATAGAATTGAAGAGGTGGTTACGGAGAAGATACTACAGTTTGACTTGCTGAAGCATGCGGATAAACCATCATTTTCCCTTAGTGGGGGAAACAAGCGCAAGCTGTCTGTGGCAATTGCTATGATTGGAGATCCTCCAATTGTCATACTCGATGAGCCATCTACAGGCATGGATCCCATTGCAAAGCGGTTCATGTGGGATGTTATTTCCCGCCTATCTACAAGACGAGGGAAAACAGCTGTTATACTCACTACCCACAGCATGAATGAAGCTCAGGCACTGTGCACCCGGATGGGGATAATGGTTGGAGGGCACCTTAGATGCATTGGAAGTCCCCAGCACTTGAAGACACGATTTGGAAATCATCTTGAGTTGGAGGTAAAACCAATGGAAGTTGGCTCTTTGGAATTGGAAACACTTTCACTGATGATTCAAGAAAAGCTCTCTGAAGCTCCTTCTCATCCAAGAAGCTTATTAAGTGACCTTGAGACTTGCATTGGAGGCACTGTTATCGCATCTGATAGTGCATCAGTGGCTGAAATTAGCTTGTCAAAGGACATGGTAATCAAGATAGCCCAATGGCTTGGCAATGAAGAAAGAGTCAAGGCTCTAGTAAATCCAAATGTGGCATCTGAGGGATTTCTCAGTGAACAATTATCAGAGCAACTGGTCCGTGATGGTGGAATTCCATTGCCAGTGTTTACTGAATGGTGGTTGACAAAGGAAAAGATCTCTGTAATTGAAACTTTTATTCTATCATCCTTTCCTGGTGCTACCTTCCAAGGGTGCAATGGATTGAATGCCAGATACCAGTTGCCATACGGGAAAGATCTGTCATTAGCAGATGCTTTTGGCCACATAGAAAGGAACAGGACTCGGCTCGGAATAGCAGAATATAGCATCAGCCAATCTACTCTCGAGACCATTTTCAATCGCTTCGCTGCAAACCCGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_23388.p1 GENE.S_Transcript_23388~~S_Transcript_23388.p1 ORF type:complete len:1870 (+),score=339.90,ABC2_membrane_3|PF12698.3|6.4e-20,ABC2_membrane_3|PF12698.3|1.7e-45,ABC_tran|PF00005.23|1e-28,ABC_tran|PF00005.23|2.7e-26,AAA_21|PF13304.2|2e-08,AAA_21|PF13304.2|1.1e-08 S_Transcript_23388:272-5881(+)
MGEFRRQLKAMLRKNWLLKIRHPYVTFAEIFLPAVVMLMLMAVRTQVDTRVHPAQPYIRKDMLVEVGKGDKSPPLNQILELLVASNEYLAFAPDSNKTRAVVSLMSMQYPLLKVVSRFYKDEVELETYIRSDSYGTCDQVKNCSNPKLRGAVVFHSQGPELYDYSIRLNHTWAFSGFPDVKTIMDVNGAYVNDLELGVNPVPIMQYGFSGFLTLQQVLDSFIIFAAQQSGTGINSEDSTVPMSASSDKPSLLMLPSMKFIPSTIRLVPFPTREYTDDEFQSIIKKVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKSEILHISWFITYTLQFAVSSGVLTIITMCSLFEYSDKTLVFTYFFFFGLSAMTLSFLISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDPDVPMVLKATASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFLLCLSMMVFDALLYCVIGVYLDKVLSKEGNVRCFWDFLPKGLWQKKDRIKPHASGSGMKLEGISWEMKQQEVEGRCLQIRNLSKTYTSKKGNCCAVNSLQLTLYEHQVLALLGHNGAGKSTTISMLVGLIPPTSGDALVFGRNILTDMNDIRKDLGVCPQSDILFPELSVKEHLELFGILKGVKEEALESAVTKMIEEVGLADKVNTVASALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIVLLTTHSMDEAEALGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAAGASLAADIVRQHIPSATVVSEVGTEISFKLPLASSSCFESMFQEIESYMKSSVSNTEAGAIENESPGIESYGISVTTLEEVFLRVAGCDFDEIECIEHKTSLSDPMLSQAPGYQASKKGFSAKLCTSCYNFLMLMCVIVGRSCEFFFAAIWCFINFVGTQCCCTAVISRSDFWQHSKALLKKRAISARRDQKTIVFQLFIPAVFLFAGLLFLQLKTHPDQQSVTFTTSNFNPLLHGGGGGAPIPFDLSYSISQEIASYIDGGWIQEFKPSTYRFPDSEKALADAIEAAGPTLGPRLLSMSDFLMSSLKESYQSRYGAIVMDNQSDDGTLGYTVLHNNSCQHAAPTFINLMNSAILRLATSDRNMSIRTRNHPLPLTNSQHLQRHDLDAFSAAIIISIAFSFIPASFAVPVVKEREVKAKHQQLLSGVSILSYWTSTYLWDFFSFLLPSSFAIILFYIFGLEQFVGTGGFCPTVIMFMGYGLAIASSTYCLTFFFSDHTVAQNVVLLVHFFTGLILMVISFIMGLMETTANVNSYLKNIFRLSPGFCFADGLASLALLRQGMKDKSSNQVLDWNVTGASICYLGVESIIYFLLTLGLEVLPPHKVVPSTLDCCWRRLQSLCRGNSSSVLEPLLDSSSDAMVLGLDEDIDVRVERNRVLSGAADRAIIYLRNLRKVYPGGKLQSPKVAVHSLTFAVHEGECFGFLGTNGAGKTTTLSMLSGEVCPSEGTAYIFGKDICANPKAARQHIGYCPQFDALLEHLTVREHLELYARIKRVPDYRIEEVVTEKILQFDLLKHADKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRLSTRRGKTAVILTTHSMNEAQALCTRMGIMVGGHLRCIGSPQHLKTRFGNHLELEVKPMEVGSLELETLSLMIQEKLSEAPSHPRSLLSDLETCIGGTVIASDSASVAEISLSKDMVIKIAQWLGNEERVKALVNPNVASEGFLSEQLSEQLVRDGGIPLPVFTEWWLTKEKISVIETFILSSFPGATFQGCNGLNARYQLPYGKDLSLADAFGHIERNRTRLGIAEYSISQSTLETIFNRFAANP*

Click here to download the sequence:
Link to NCBI Protein BLAST