Transcript Information: S_Transcript_234440.p1


Annotated TAIR IDAT3G49710.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:18437845-18440010 | Forward length=721
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.70228753259504
Replicate 20.7047835553095
Replicate 30.58914295822613
Condition 2: 8 Hour
Replicate 11.7771158597611
Replicate 22.3925449239708
Replicate 32.4276381994562
Condition 3: 24 Hour
Replicate 10.39442150746906
Replicate 20.18886509646956
Replicate 30.45539802398126


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_234440.p1 GENE.S_Transcript_234440~~S_Transcript_234440.p1 ORF type:complete len:720 (+),score=162.46,PPR_2|PF13041.2|1.9e-05,PPR_2|PF13041.2|5.2e-10,PPR_2|PF13041.2|0.0065,PPR_2|PF13041.2|2.9e-09,PPR_2|PF13041.2|2.8e-10,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.025,PPR_2|PF13041.2|0.05,PPR_2|PF13041.2|5.4e+03,PPR_2|PF13041.2|1.3e+03,PPR|PF01535.16|0.0017,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|9.8e+03,PPR|PF01535.16|0.00028,PPR|PF01535.16|9.9e-08,PPR|PF01535.16|6.3e+02,PPR|PF01535.16|0.15,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|0.0011,PPR|PF01535.16|4.8e-05,PPR|PF01535.16|0.074,PPR|PF01535.16|0.00013,PPR|PF01535.16|3.7e+03,PPR|PF01535.16|1.4e+02,PPR_1|PF12854.3|0.00042,PPR_1|PF12854.3|4.3e-05,PPR_1|PF12854.3|4.8e+03,PPR_1|PF12854.3|0.081,PPR_1|PF12854.3|4,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|0.015,PPR_1|PF12854.3|0.0073,PPR_1|PF12854.3|4.8,PPR_1|PF12854.3|0.00016,PPR_3|PF13812.2|2.8e+03,PPR_3|PF13812.2|0.03,PPR_3|PF13812.2|3.6e-05,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|0.53,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|3.7e+02,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|0.041,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|11,PPR_3|PF13812.2|0.066,PPR_3|PF13812.2|3.6e+02,PPR_3|PF13812.2|1.7e+02,DYW_deaminase|PF14432.2|1.7e-36,TPR_14|PF13428.2|3.7e+03,TPR_14|PF13428.2|2.4e+02,TPR_14|PF13428.2|2.9e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|3.8e+02,TPR_14|PF13428.2|1.5e+03,TPR_14|PF13428.2|0.24 S_Transcript_234440:289-2448(+)
ATGAACCCCATTTCATGGACCCTTTATGGATTTTGCCAACTTCTAAAAACATGCATTTCAAAAACCGATCTTTTAACAGGAAAATCCCTTCACACTCTTTACTTAAAGTCTATCATACCCCCTTCCACTTACCTTTCCAACCACTTTATCCTTCTCTACACCAAATGCCGCCATCTTGCTGCTGCTCGCAACACATTCACCTTTACTCCATGCCCAAATGTCTTCTCCTACAATGCCCTCCTATCTGCTTATGTTAGAGACTCTGATATCCGCAATGCGCACCAACTGTTTGACGAAATTCCTCAACCAGATATTGTGTCTTTTAATACCCTTATTGCTGCTTATGCGGAGCGAGGCCAGAAATGGATGGCTTTTGATATTTTTGATAAGATGAGACACATGGGGGGTATTGAGATGGATGGGTTCACTTTGTCTTCAATGGTCTCTGCTTGTTTTGATGATGTTTTGCTCATTAATCAACTACATTGTGTGGGTGTTAAGGGAGGACATGATGGGTATGTTTCACTTAATAATGCCCTTGTTAGCTACTATAGTAAAAATGGGTTTTTGGAGGAGGCGAAGAGGGTGTTTTCTGAGATGAGTGGGAAGCAAGATAAGGTGTCTTGGAATGCTATGATTGTTGTCTATGGACAACATGGTGAAGGGTCAAAAGCCCTTGAGTTGTATACGGAAATGGTTAAGAGGGGTTTGTATGTTGACATGTATACATTGGCTAGTGTTTTGAGTGCATTTACGAGCTTGAAAAACTTGTTTGGTGGGGTTCAGTTTCATGCTCATTTGATCAAAATAGGTTTTCATAAGAATCCCCATGTGGGAAGTGGATTGATTGATTTGTATGCTAAATGTGGGGGTGACATGTATGAATCTAGGAAAGTCTTTGAGGAAATTCCTGAACCTGATTTAGTTTTGTGGAATACCATGATCTCTGGTTATTCACAATATGAGGCATTATCTGAAGATGCTCTTGTTTGTTTCAAGGATATGTTGCGTATGGGTCATCACCCTGATGATTGCAGCTTCGTTTGTGTGATTAATGCTTGTTCAAATTCACCCTCTCCTTCACATGGAAAACAGATTCATTCTTTGGCCTTGAAGTCCGATATGCCATCGAATAGGATAGCTGTGAACAATGCCCTGGTAGCAATGTATGCAAAATGTGGAAATCTTCAAGAAGCAAGACATTTATTTGATAGGATGCCTGTGCATAATGTTGTTTCTCTGAACACCATGATTGATGGTTATTCACAACATGGGTTTGGACATGAAGCATTGCATATTTTTGAATGGATGCTGGAAATTGGTATCACTCCTACCAATATCACCTTCATCTCTGTACTTTCTGCATGTGCACACACGGGAAAAGTTGATGAAGGCCAGAATTATTTTGATATGATGGGAGGGAGATTTGGGATTGATCCTGAGCCAGAACATTATTCTTGCATGATCGACATGTTTGGCCGAGCTGGGAAGTTGCATGAAGCTGAGCAACTAATTGAGTCTATGCCGTGTAGTCCTGGTTCTATTGGTTGGGCAGCTTTGCTTGGTGCCTCCAGAAAACATGGCAATATTGACTTAGCTGTGAAGGCAGCTAATCGGTTTCTTCAGTTGGAACCGTCAAATCCTGGTCCTTATGTCATGCTTGCCAACATGTATGCTGATGCTGAAAGATGGGAAGATGTTGCAAGAGTGAGGAAACTGATGCGAGATAGGAAGCTTAGGAAGAAACCAGGCTGCAGCTGGATTGAAGTAGACAAGAAGGTTCACATTTTTGTTGCTGGTGATGCTTCGCACCCTATGATAAAGGAGATATATGAATACTTGAAGGAACTATTAGTGAAGATAAAGCGGGTTGGCTATGTGCCTGACATGAGATGGGCATTGGTCAAGGATGATGGGCTAGCAGAAGCAGAGAAAGAGAAGATTTTGGTTCATCACAGTGAGAAGCTTGCAGTTGCATTTGGGCTTCTTTCAACCCAAGAGGGACCTATCCTTGTTGGCAAGAATCTGAGAATATGTGGAGATTGTCATAGTGCCATCAAGTTTATTTCTGCTGTCACTGGAAGGCAGATAACCATCAGAGATACCCGCAGGTTTCATTGCTTCAAGGATGGACGATGCACTTGTGGGGATTACTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_234440.p1 GENE.S_Transcript_234440~~S_Transcript_234440.p1 ORF type:complete len:720 (+),score=162.46,PPR_2|PF13041.2|1.9e-05,PPR_2|PF13041.2|5.2e-10,PPR_2|PF13041.2|0.0065,PPR_2|PF13041.2|2.9e-09,PPR_2|PF13041.2|2.8e-10,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.025,PPR_2|PF13041.2|0.05,PPR_2|PF13041.2|5.4e+03,PPR_2|PF13041.2|1.3e+03,PPR|PF01535.16|0.0017,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|9.8e+03,PPR|PF01535.16|0.00028,PPR|PF01535.16|9.9e-08,PPR|PF01535.16|6.3e+02,PPR|PF01535.16|0.15,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|0.0011,PPR|PF01535.16|4.8e-05,PPR|PF01535.16|0.074,PPR|PF01535.16|0.00013,PPR|PF01535.16|3.7e+03,PPR|PF01535.16|1.4e+02,PPR_1|PF12854.3|0.00042,PPR_1|PF12854.3|4.3e-05,PPR_1|PF12854.3|4.8e+03,PPR_1|PF12854.3|0.081,PPR_1|PF12854.3|4,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|0.015,PPR_1|PF12854.3|0.0073,PPR_1|PF12854.3|4.8,PPR_1|PF12854.3|0.00016,PPR_3|PF13812.2|2.8e+03,PPR_3|PF13812.2|0.03,PPR_3|PF13812.2|3.6e-05,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|0.53,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|3.7e+02,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|0.041,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|11,PPR_3|PF13812.2|0.066,PPR_3|PF13812.2|3.6e+02,PPR_3|PF13812.2|1.7e+02,DYW_deaminase|PF14432.2|1.7e-36,TPR_14|PF13428.2|3.7e+03,TPR_14|PF13428.2|2.4e+02,TPR_14|PF13428.2|2.9e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|3.8e+02,TPR_14|PF13428.2|1.5e+03,TPR_14|PF13428.2|0.24 S_Transcript_234440:289-2448(+)
MNPISWTLYGFCQLLKTCISKTDLLTGKSLHTLYLKSIIPPSTYLSNHFILLYTKCRHLAAARNTFTFTPCPNVFSYNALLSAYVRDSDIRNAHQLFDEIPQPDIVSFNTLIAAYAERGQKWMAFDIFDKMRHMGGIEMDGFTLSSMVSACFDDVLLINQLHCVGVKGGHDGYVSLNNALVSYYSKNGFLEEAKRVFSEMSGKQDKVSWNAMIVVYGQHGEGSKALELYTEMVKRGLYVDMYTLASVLSAFTSLKNLFGGVQFHAHLIKIGFHKNPHVGSGLIDLYAKCGGDMYESRKVFEEIPEPDLVLWNTMISGYSQYEALSEDALVCFKDMLRMGHHPDDCSFVCVINACSNSPSPSHGKQIHSLALKSDMPSNRIAVNNALVAMYAKCGNLQEARHLFDRMPVHNVVSLNTMIDGYSQHGFGHEALHIFEWMLEIGITPTNITFISVLSACAHTGKVDEGQNYFDMMGGRFGIDPEPEHYSCMIDMFGRAGKLHEAEQLIESMPCSPGSIGWAALLGASRKHGNIDLAVKAANRFLQLEPSNPGPYVMLANMYADAERWEDVARVRKLMRDRKLRKKPGCSWIEVDKKVHIFVAGDASHPMIKEIYEYLKELLVKIKRVGYVPDMRWALVKDDGLAEAEKEKILVHHSEKLAVAFGLLSTQEGPILVGKNLRICGDCHSAIKFISAVTGRQITIRDTRRFHCFKDGRCTCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST