Transcript Information: S_Transcript_23469.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.71284824737091
Replicate 21.1819351548669
Replicate 30.98800371876432
Condition 2: 8 Hour
Replicate 10.95202635344344
Replicate 20.39949729713797
Replicate 30.38064013580324
Condition 3: 24 Hour
Replicate 10.39008720518918
Replicate 21.2141327630186
Replicate 31.1259841252284


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_23469.p2 GENE.S_Transcript_23469~~S_Transcript_23469.p2 ORF type:3prime_partial len:112 (+),score=27.54,UBN2_3|PF14244.2|1.1e-21 S_Transcript_23469:1825-2157(+)
ATGGCTAGCAATTCTGAAAGTTCTAGTTCAAGTTCTTCTGCAACAATTGATATGACTCATCCTCTGTATTTGCATCCTAGTGATCATCCAGGAATGATGCTGGTTAGTTCTCCATTTGATGGTAATGGTTTCAATTCATGGAAGAGAGGTAAGCTTATTGCTTTGACTGCTAAGAATAAATTAGGTTTAGTGAATGGAACTGTTACTAAACCTGTTGCTGATTCTTCTATTCTGATGCTTTGGGAAAGATGCAATAATATGGTAATTTCATGGATTTTGAATGCTTTAGCAAGAGATATTGCAGATAGTGTTCTATATAATGATACTGCTGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_23469.p2 GENE.S_Transcript_23469~~S_Transcript_23469.p2 ORF type:3prime_partial len:112 (+),score=27.54,UBN2_3|PF14244.2|1.1e-21 S_Transcript_23469:1825-2157(+)
MASNSESSSSSSSATIDMTHPLYLHPSDHPGMMLVSSPFDGNGFNSWKRGKLIALTAKNKLGLVNGTVTKPVADSSILMLWERCNNMVISWILNALARDIADSVLYNDTAE

Click here to download the sequence:
Link to NCBI Protein BLAST