Transcript Information: S_Transcript_236555.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3894337994271
Replicate 20.93035859579882
Replicate 30.92584016483939
Condition 2: 8 Hour
Replicate 11.0277296538377
Replicate 20.85354442601367
Replicate 30.89886104358355
Condition 3: 24 Hour
Replicate 10.96503501364071
Replicate 20.59162560339863
Replicate 30.8103468081965


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_236555.p1 GENE.S_Transcript_236555~~S_Transcript_236555.p1 ORF type:internal len:498 (+),score=101.03,UBN2_3|PF14244.2|4.1e-37,Retrotrans_gag|PF03732.13|1.8e-05,Retrotrans_gag|PF03732.13|3.2e+03 S_Transcript_236555:1-1491(+)
AAAATTTTTGATGGTACAGCATTCAGTTCATGGAAGAAATCTATCACTATTGCTATTTCTGCTAAGAATAAATCTGGTTTCATTGATGGTTCTTGTGCTTGTCCTGATCTTGATGATCCACTATACAAAGTTTGGGTTAGATGTGATAACATGGTAACTTCTTGGCTTCTAAATGCTCTTTCTAAAAATATTGCTGAATCTGTGCTATACTGCAACTCTGCATTTGCAATTTGGAGGGACTTGTGTGAAAGATATGGTCAGACTAATGGTGCTCAACTTTTTCAAACTCAGAAAAATGTCTGTAATATGAGTCAGGGAGATAGTAACATCTCTGCATATTTCATGAATGCAAAAAGGCTTTGGGATGAACACAATGCAGTCCACATACTTCCTGCTTGTACATGTGGTCTAGCTCTTGAATGGCAAAAGTATATGGATAGATTGAAATTGATGCAGTTCTTGATGGGTCTTAATGAAGATTTTGTTCCAACTAGGGGAAATATTCTAATTCAAGTTCCTCTACCAAATTTGAATCAAGCATACTCCATGCTTTTACAAGATGAAGCACAAAAAGAGATTCATGCTAGTACCAAGTTTAACACTGATTCAGCTTCCTTTCATGTCACTTCTGATAGATATTCTCAAAGACCTCCTCCACATAGAAATTACTCATCTAACCAAAGGCCTTATTCAACTGATTCAAGGAGCATTTCTGATACAAAAAGATCTGATCTATTCTGCAATTACTGTAAAAAGCCTGGGCACATTATTAAGCAGTGTTACAAACTCAATGGTATCCCATCTAATTTCAGATCTAATAACTCTCGAGTAAAGAGAATGGCTGCACATGTTGAAGGTTTTCAAGACCCTGGAGAGTCCAATTTCGATGCTCAGTCTGGTATTTCTCAATCTCATACATCTCCAGGATCTCCTACTTTAACCAAGGAACAAACAATGCAACTTCTAGCACTTCTGAATAATCATAACATGTCTGATGTTTCTTCTGGAGGTTCTGCTAATACAGTCACTATCAATGCTCCCCAATTCTCAGGTGAAGCTTCCTCTCTCTATTCTCATGAGGTTTCTTGTTTTTGTAACATGTGTAAAGTAGTTGCTAAAGCATGGATCATTGACACTGGGGCCAGTGATCATATGTGTTGTGATCAATCTCTTTTTAAACACATTTCTATTCTCCCTTCCCCATATAATGTGTCTTTGCCTAATGGTACTGCTCTCTCTGTGACACATGCTGGTACAGTTTCTTTATTGCCTGAGCTCACTTTACATGATGTTTTGTATGTCCCCTTGTTCAAATGCAATCTCCTTTCTATACCCAAGCTGACTAAACAAGTTTCCTGTTCAATATCATTCTCATCCTCCCTCTGTGTGCTGCAGGCCTCTTCAATGAAGAGGCCCTTGGTTCTTGGTAAGCAGCAGGGGGGTCTCTACCTTCTACATCCCACAGAAGCATCTTCTTCTACCTCTTCAACT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_236555.p1 GENE.S_Transcript_236555~~S_Transcript_236555.p1 ORF type:internal len:498 (+),score=101.03,UBN2_3|PF14244.2|4.1e-37,Retrotrans_gag|PF03732.13|1.8e-05,Retrotrans_gag|PF03732.13|3.2e+03 S_Transcript_236555:1-1491(+)
KIFDGTAFSSWKKSITIAISAKNKSGFIDGSCACPDLDDPLYKVWVRCDNMVTSWLLNALSKNIAESVLYCNSAFAIWRDLCERYGQTNGAQLFQTQKNVCNMSQGDSNISAYFMNAKRLWDEHNAVHILPACTCGLALEWQKYMDRLKLMQFLMGLNEDFVPTRGNILIQVPLPNLNQAYSMLLQDEAQKEIHASTKFNTDSASFHVTSDRYSQRPPPHRNYSSNQRPYSTDSRSISDTKRSDLFCNYCKKPGHIIKQCYKLNGIPSNFRSNNSRVKRMAAHVEGFQDPGESNFDAQSGISQSHTSPGSPTLTKEQTMQLLALLNNHNMSDVSSGGSANTVTINAPQFSGEASSLYSHEVSCFCNMCKVVAKAWIIDTGASDHMCCDQSLFKHISILPSPYNVSLPNGTALSVTHAGTVSLLPELTLHDVLYVPLFKCNLLSIPKLTKQVSCSISFSSSLCVLQASSMKRPLVLGKQQGGLYLLHPTEASSSTSST

Click here to download the sequence:
Link to NCBI Protein BLAST