Transcript Information: S_Transcript_23662.p1


Annotated TAIR IDAT5G51980.2
Annotated Gene NameTransducin/WD40 repeat-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21113650-21115902 | Reverse length=443
E-Value1.3E-209
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.466949380419
Replicate 221.617576315323
Replicate 320.841118802993
Condition 2: 8 Hour
Replicate 123.142351823974
Replicate 223.525553838636
Replicate 322.558475492267
Condition 3: 24 Hour
Replicate 119.689782877172
Replicate 220.936077061559
Replicate 322.111702606279


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_23662.p1 GENE.S_Transcript_23662~~S_Transcript_23662.p1 ORF type:complete len:446 (+),score=63.88,WD40|PF00400.28|0.00072,WD40|PF00400.28|1.6e+03,WD40|PF00400.28|0.0069,WD40|PF00400.28|0.00095,WD40|PF00400.28|3.1,WD40|PF00400.28|37,Nup160|PF11715.4|1.4,Nup160|PF11715.4|0.0015,Nup160|PF11715.4|8.4,Nup160|PF11715.4|7.2e+02,zf-CCCH|PF00642.20|9.7e+02,zf-CCCH|PF00642.20|6e-07,zf-CCCH_3|PF15663.1|0.027,zf-CCCH_3|PF15663.1|0.19,Torus|PF16131.1|7.9,Torus|PF16131.1|0.0011 S_Transcript_23662:388-1725(+)
ATGGACTTCGATTCAACAGGAGGAGGAAGTAAACGAGTATTCCAAAGATTAGGGCCTACTTCAAACCCCCAACACCAGGTCCAACACAACAAACCCCAACACCAAAAAGTATGTTACCATTGGCAAGCAGGTAGATGCAGTAGATTCCCCTGCCCTTTTCTTCACAGAGAACTCCCCCCACCAAACCCACATCACCACCCTTCTACTTCTTCCAATCAAACTAATGGGTCCTCCAAGAGACCTCACAGTTTAGGTGGGGCCGGCTCCGATGAGGGGTTTTCAATGCGTAAAAGCCCTAATTTCAACAACACTTGGGGTAGACATACCAGTGGTGGGGGTGGTCCACCTAAGAAGATGGAGAAAGTTTGTAATTATTGGGTTCAAGGGACTTGTAATTATGGTGATAAGTGTAAATTTTTGCACACTTGGTCTATCGGTGATTCGTTCTCTCTCTTGACCACCCTTGAAGGCCACCAGAAGGTTGTAACTGGGATCGCTTTGCCAGCAGGGAAGGATAAGCTTTATAGTGGCAGTAAAGATGAGAATGTCAGAATTTGGGACTGCCAATCTGGACAGTGTGTAAATGCTATTCCTCTGGGAGGAGAAATTGGCTGCATGATCAGTGAAGGACCATGGGTTTTTATTGGCTTACCAAATATGGTCAAGGCATGGAATGTTGAGACAGTCACTGATATGAGTCTCAGTGGACCTGTTGGACAAGTTTATGCCCTGGTGGTGGGGAACGATATGCTCTTTGCTGGTACTCAGGATGGGGCTATATTGGCGTGGAAATTCAATCCAATAAGTAATTGCTTTGAACCAGCTGCATCATTGACGGGGCATACTCGTGCTGTTGTTACAATGGTTGTTGGAGGAGCTAATAGACTGTATTCGGGTTCAATGGACAATTCTATAAGAGTGTGGAATCTCGAAACATTGCAATGCATGCAGACTTTGACGGATCATACTTCCGTAGTCATGTCTGTCCTTTGTTGGGACCAGTTCCTGCTATCAGCTTCGCTGGACAAGACGATAAAGGTGTGGGTTGCTACTCAGAGTGGGAACTTGGAAGTGACCTATACTCACACTGAAGAGCATGGCATTCTCACTCTATGCGGGATGTGTGATTTGGAAGGGAAGCCGTTCTTACTCTGTGCCTGTAATGACAATACTGTCCGCCTATACGACTTGCCATCGTTTATGGAGAGGGGCAAGATCTTTTCAAAGCAGGAGATCCGAGCTGTTGAAACAGGTCCTGGTGGACTATTTTTCACTGGAGACGGAAATGGTCAAGTGAGGGTATGGCAATGTTCATCAGCATCGAAGACTACCGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_23662.p1 GENE.S_Transcript_23662~~S_Transcript_23662.p1 ORF type:complete len:446 (+),score=63.88,WD40|PF00400.28|0.00072,WD40|PF00400.28|1.6e+03,WD40|PF00400.28|0.0069,WD40|PF00400.28|0.00095,WD40|PF00400.28|3.1,WD40|PF00400.28|37,Nup160|PF11715.4|1.4,Nup160|PF11715.4|0.0015,Nup160|PF11715.4|8.4,Nup160|PF11715.4|7.2e+02,zf-CCCH|PF00642.20|9.7e+02,zf-CCCH|PF00642.20|6e-07,zf-CCCH_3|PF15663.1|0.027,zf-CCCH_3|PF15663.1|0.19,Torus|PF16131.1|7.9,Torus|PF16131.1|0.0011 S_Transcript_23662:388-1725(+)
MDFDSTGGGSKRVFQRLGPTSNPQHQVQHNKPQHQKVCYHWQAGRCSRFPCPFLHRELPPPNPHHHPSTSSNQTNGSSKRPHSLGGAGSDEGFSMRKSPNFNNTWGRHTSGGGGPPKKMEKVCNYWVQGTCNYGDKCKFLHTWSIGDSFSLLTTLEGHQKVVTGIALPAGKDKLYSGSKDENVRIWDCQSGQCVNAIPLGGEIGCMISEGPWVFIGLPNMVKAWNVETVTDMSLSGPVGQVYALVVGNDMLFAGTQDGAILAWKFNPISNCFEPAASLTGHTRAVVTMVVGGANRLYSGSMDNSIRVWNLETLQCMQTLTDHTSVVMSVLCWDQFLLSASLDKTIKVWVATQSGNLEVTYTHTEEHGILTLCGMCDLEGKPFLLCACNDNTVRLYDLPSFMERGKIFSKQEIRAVETGPGGLFFTGDGNGQVRVWQCSSASKTTV*

Click here to download the sequence:
Link to NCBI Protein BLAST