Transcript Information: S_Transcript_237202.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value6E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.34295104684511
Replicate 20.056862859684317
Replicate 30.38026259966187
Condition 2: 8 Hour
Replicate 10.32977407706907
Replicate 20.28829701855318
Replicate 30.16481325467769
Condition 3: 24 Hour
Replicate 10.45040996887823
Replicate 20.5841188550605
Replicate 30.1300105381707


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_237202.p1 GENE.S_Transcript_237202~~S_Transcript_237202.p1 ORF type:5prime_partial len:388 (+),score=43.39,LRR_8|PF13855.2|9.9e+02,LRR_8|PF13855.2|1.1e-09,LRR_8|PF13855.2|1.7e-11,LRR_8|PF13855.2|4,LRR_8|PF13855.2|0.048,LRR_8|PF13855.2|2.7e+03,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|2.3e+03,LRR_1|PF00560.29|5.8e+03,LRR_1|PF00560.29|0.022,LRR_1|PF00560.29|4.9e+02,LRR_1|PF00560.29|21,LRR_1|PF00560.29|0.00038,LRR_1|PF00560.29|2.6e+02,LRR_1|PF00560.29|2.1e+02,LRR_1|PF00560.29|40,LRR_4|PF12799.3|28,LRR_4|PF12799.3|0.027,LRR_4|PF12799.3|5e-05,LRR_4|PF12799.3|0.0073,LRR_4|PF12799.3|0.006,LRR_4|PF12799.3|0.011,LRR_4|PF12799.3|12,LRR_4|PF12799.3|5 S_Transcript_237202:3-1166(+)
GATATAAGCCCTCTAAAATTCCACCACCTATTCTTTTCCTTCCTCCTTTTTTCTCAGCTTTTCCAATCAAGTCTTTCTTCTGATGATCTTTCCCCCACTACAAAAGTTCATCGCTATGATAGAAAGGTACTTGTCCGAATTCAAAACCATTTTGGCAACAAATCGCCAATGTGGACCTCCTTGAATGACTGCTGCGTCTACCCTTGTGACGAGAAGTCCATGGTGTGTGACAAAAACGGTCATGTCATTCAGCTCAGTCTCACCTCTAATCGAACTTTGTCTGGCGAGATCCCCACCTTGCTTGGGGATCTCGTCTTCCTCCAAGACCTCTGGATATGGGGCTCGTTTTTCACGGGCCCCATTCCCAAGACCTTGGGGAAGTTAACCAACCTCCGTTCATTGTTGGTGGCTAACACCAGCATGACGGGCATGGTACCTGAGTCCCTAGGCCGACTGAAGAATCTACAAGTACTCGAACTTAGAAACAACAGCTTCACCGGCCCTATCCCAGAGTCATTCTCCAAGCTCATGAACCTTGAAACACTTGTTCTTTCCACAAACAAGTTGTATGGCTCAATACCTGATTTTCTTGGCTACATGAGAAACCTCAAATGGGTTTCTCTTGATTCCAATAGATTTTCTGGTTCGATCCCAGCTTCTCTAGGTCACCTCTACAACCTTCAGTCCTTGGATCTTTCTCATAATCAACTTACTGGCTTGATTCCAAAGAGCTTTGGGTCCTTGAATAAGGTTTCATCCCTTATGTTGAATGACAACCAAATAACCGGGCTGATCCCCAATGTTGCTCAAGCTGTTGTTGAGACATTTGATGTTTCTGGCAATAAGCTCACCGATGCCTCTTCTTTGTTTCAAAGCAACGACTTTGGACCATACGCTATTAACCTTAGCAACAATCGTCTCAAGTTTGATTTCTCAACAGCCAAGTTTTACAAGTATCTTGTTGATCTGAATATAAGCCATAATATGATATATGGCTCTCTACCTAAAGGATTGGAAAAGTTGTCTTTGGTGGCATTTGATGCGAGTTATAATCAGCTTTGTGGACACATCCCAAATAGTCGAGATTTGAAGCGGCTTAGCCCAATTAACTTTGCCCACAACAAATGTCTGTGTGGTGCTCCTTTATCCCCTTGTAACAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_237202.p1 GENE.S_Transcript_237202~~S_Transcript_237202.p1 ORF type:5prime_partial len:388 (+),score=43.39,LRR_8|PF13855.2|9.9e+02,LRR_8|PF13855.2|1.1e-09,LRR_8|PF13855.2|1.7e-11,LRR_8|PF13855.2|4,LRR_8|PF13855.2|0.048,LRR_8|PF13855.2|2.7e+03,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|2.3e+03,LRR_1|PF00560.29|5.8e+03,LRR_1|PF00560.29|0.022,LRR_1|PF00560.29|4.9e+02,LRR_1|PF00560.29|21,LRR_1|PF00560.29|0.00038,LRR_1|PF00560.29|2.6e+02,LRR_1|PF00560.29|2.1e+02,LRR_1|PF00560.29|40,LRR_4|PF12799.3|28,LRR_4|PF12799.3|0.027,LRR_4|PF12799.3|5e-05,LRR_4|PF12799.3|0.0073,LRR_4|PF12799.3|0.006,LRR_4|PF12799.3|0.011,LRR_4|PF12799.3|12,LRR_4|PF12799.3|5 S_Transcript_237202:3-1166(+)
DISPLKFHHLFFSFLLFSQLFQSSLSSDDLSPTTKVHRYDRKVLVRIQNHFGNKSPMWTSLNDCCVYPCDEKSMVCDKNGHVIQLSLTSNRTLSGEIPTLLGDLVFLQDLWIWGSFFTGPIPKTLGKLTNLRSLLVANTSMTGMVPESLGRLKNLQVLELRNNSFTGPIPESFSKLMNLETLVLSTNKLYGSIPDFLGYMRNLKWVSLDSNRFSGSIPASLGHLYNLQSLDLSHNQLTGLIPKSFGSLNKVSSLMLNDNQITGLIPNVAQAVVETFDVSGNKLTDASSLFQSNDFGPYAINLSNNRLKFDFSTAKFYKYLVDLNISHNMIYGSLPKGLEKLSLVAFDASYNQLCGHIPNSRDLKRLSPINFAHNKCLCGAPLSPCNK*

Click here to download the sequence:
Link to NCBI Protein BLAST