Transcript Information: S_Transcript_238739.p1


Annotated TAIR IDAT3G49740.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:18447788-18450001 | Forward length=737
E-Value1E-241
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.28927175255631
Replicate 20.32974277871286
Replicate 30.22552258797881
Condition 2: 8 Hour
Replicate 11.5066851854496
Replicate 21.3982405399829
Replicate 31.4191257237012
Condition 3: 24 Hour
Replicate 10.35616657865099
Replicate 20.2155525557533
Replicate 30.47976714901036


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_238739.p1 GENE.S_Transcript_238739~~S_Transcript_238739.p1 ORF type:5prime_partial len:736 (+),score=97.80,PPR_2|PF13041.2|5.3e+02,PPR_2|PF13041.2|10,PPR_2|PF13041.2|0.00036,PPR_2|PF13041.2|0.00014,PPR_2|PF13041.2|22,PPR_2|PF13041.2|1.8e-07,PPR_2|PF13041.2|1e+02,PPR_2|PF13041.2|1.3e-12,PPR_2|PF13041.2|0.87,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|8,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|0.0048,PPR_2|PF13041.2|25,PPR_2|PF13041.2|21,PPR|PF01535.16|1,PPR|PF01535.16|8e-06,PPR|PF01535.16|21,PPR|PF01535.16|3.9,PPR|PF01535.16|3.4e-06,PPR|PF01535.16|2.4,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|0.12,PPR|PF01535.16|0.002,PPR|PF01535.16|4.1,PPR|PF01535.16|7.6e-05,PPR|PF01535.16|0.023,PPR|PF01535.16|1.1,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|2.3,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|0.00024,PPR_3|PF13812.2|0.93,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|13,PPR_3|PF13812.2|59,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|90,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|43,PPR_3|PF13812.2|0.064,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|79,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|5.4,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|4e-05,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|7.9e+02,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|1.6,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|2.5,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|4.5e+03,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|1.9,PPR_1|PF12854.3|0.043,PPR_1|PF12854.3|5e+03 S_Transcript_238739:1-2208(+)
TTGATGAATCTGATTTACTACAACCAAGGCGCCAAACTCGGAGCAAAGGATGTTACTAAGCAACTCATAAATCTCAACCGTCAGTTAGCAAACTTAACCCGCTCACATTCTCACTACGAAACTCTCCGTCTCTTCCTACAAATCCACGCATCTAAAAGCCTGAGACCAGACCAATATTCTCTCTCCACTGCCCTCACATCCTCTGCCAACTTACCCAACTTGAGATATGGCCACCAGCTTCATGCTCATGCCGTTTACACTGGCCTCGAATTTTACCCCCATGTCTCAAACACTCTGCTTTCATTCTATGCCAAATCCGATGATTTGGGTTCGGTCAAAAGAGTCTTTTGTGAAATGGGTACCCCAGATATTTACTCTTGGACCTCTCTGTTATCAGCATGTGCTAAGCTGGGAGAAGTTGAATATGCCCGCCAACTGCTCGATGAGATGCCTCAAAGAAATGCTGCACCTTGGAACTCTGTAATCACTAGTTGCTCCTCTGAGAATGGCTATCAGGACACTGCATTTAGTTTGTTCAAGAGAATGCATTTGCTGGGTGTGAGCCATGATAATTACAGTTTTGCTAGTGTCCTTAGCTCTTGTTTGATTAGGTCCTATGGTTTTGGGAGGGAGGTGCATTCGTTGATTATTAAGAGTGGGTACTTGAATTGGAATTCAGTGATGAATTCTTTGGTTTCTATGTATTTTAATTGCGGAAATGCCACAGGTGCCCAAAAAGTTTTTGGAGAAGCAGATGAGACAATGCATAATGAGATTACTTATAACGCGATGATAAATGGATTAGTTAGTCTGGAAAGAGGTAATGAAGCCTTGATGATGTTCAAAGAGATGCTAGGGGCTCGTCTAATACCTACTAGGTTGACTTTTCTGAGCCTGATGAGCTCAGATTCAGCTGTCGAAGTGTGCAATCAGTTACATGCCCGGGTTATTAAGATGGGTTATGAAACTTGTACATCGGTGAGTAACGCTGCTATGGCCATGTATGCTGATCATGGGAAGCTGGACGCAGTGAAGCTGCTTTTTGAAAAATTGGAGGAGAAGGATGTTGTCTCATGGAACACTGTGATAGCTGCATATGCTCAAAATGATCACACTAGATTGGCAACCTTGGTTTATATGGAGATGCAGAGGAGAGGTATAGTTCCAGATGAGTACACAATGAGCACACTTTTAGCTAGCTCTGAAAGCTTAGAAGTTGTTCAGATGTTCTACGCATTTGTACTTAAAAATGGGCTCAGTCTGATGAGCGAAGTCGTGAATGCTTTGGTCTCTGCATTCTCTAAGCAAGGTAACATTGACCATGCCTATCAAATATTCTGTGGCAAGCACTCAAAAAATTTGATTACATGGAATGCAATTATTTCTGGGTTCTTGTTAAACCAACGTCCTTTGCAGGCCCTAGAACTATTTCTTTTGATGCAGAAGTTGCAAATCTGGCCTGATGTCTATACTTTAACTATGGTATTGAGCATTTGTGCCAGCATTTCATCCCTGAGACATGGAAGGGAGGTCCATGGCTACATTTTTACACATGGGCTTATAAGCGAAACATCCTTAGGAAATGGCCTGATCACAATGTATGCAAAATGTGGGATTTTAAATTGTGCTGCTAAGGCATTCAATTATATGATTGAAAGGGATGTTGTGAGTTGGAATGCCATTATTTCTGCATTTGCACAATATGGAGAAGGAAGCAAAGCTGTCGAATACTTCACAGAAATGCAGTTTGAGATTGGCATCAGACCAGATCAGGCCACATTTACTGCTGTCCTATCTGCTTGCAGTCATGCTGGTTTAGTGTGTGAAGGCATCCGCATCTTCAACTTCATGGTGAATGATTATGGCTTCAAGCCAGGAGTAGATCACTTTTCTTGCCTTATTGACCTTTTAGGACGAGCTGGATACCTTGATGAAACAGAAGAACTAATTGATAGTAAGAATTCAAAGGTTGATCCCAATGTTTGGTGGACCTTGTTTAGCGCCTGTGCGGCCTATGGAAATGTAAGGCTGGGAAGAATTGTTGCGGGTTTGCTTCTCCAGACTCAGAAAAATGACCCATCTGTTTATGTGATGCTATCAAATATTCATGCAAATGCCGGACAATGGGAAGACGCCGCTAACATTAGGGACATGATGAAGAGAGTTGGAGTTGCAAAACAACCAGGCTACAGTTGGATCAAGCCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_238739.p1 GENE.S_Transcript_238739~~S_Transcript_238739.p1 ORF type:5prime_partial len:736 (+),score=97.80,PPR_2|PF13041.2|5.3e+02,PPR_2|PF13041.2|10,PPR_2|PF13041.2|0.00036,PPR_2|PF13041.2|0.00014,PPR_2|PF13041.2|22,PPR_2|PF13041.2|1.8e-07,PPR_2|PF13041.2|1e+02,PPR_2|PF13041.2|1.3e-12,PPR_2|PF13041.2|0.87,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|8,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|0.0048,PPR_2|PF13041.2|25,PPR_2|PF13041.2|21,PPR|PF01535.16|1,PPR|PF01535.16|8e-06,PPR|PF01535.16|21,PPR|PF01535.16|3.9,PPR|PF01535.16|3.4e-06,PPR|PF01535.16|2.4,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|0.12,PPR|PF01535.16|0.002,PPR|PF01535.16|4.1,PPR|PF01535.16|7.6e-05,PPR|PF01535.16|0.023,PPR|PF01535.16|1.1,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|2.3,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|0.00024,PPR_3|PF13812.2|0.93,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|13,PPR_3|PF13812.2|59,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|90,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|43,PPR_3|PF13812.2|0.064,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|79,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|5.4,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|4e-05,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|7.9e+02,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|1.6,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|2.5,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|4.5e+03,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|1.9,PPR_1|PF12854.3|0.043,PPR_1|PF12854.3|5e+03 S_Transcript_238739:1-2208(+)
LMNLIYYNQGAKLGAKDVTKQLINLNRQLANLTRSHSHYETLRLFLQIHASKSLRPDQYSLSTALTSSANLPNLRYGHQLHAHAVYTGLEFYPHVSNTLLSFYAKSDDLGSVKRVFCEMGTPDIYSWTSLLSACAKLGEVEYARQLLDEMPQRNAAPWNSVITSCSSENGYQDTAFSLFKRMHLLGVSHDNYSFASVLSSCLIRSYGFGREVHSLIIKSGYLNWNSVMNSLVSMYFNCGNATGAQKVFGEADETMHNEITYNAMINGLVSLERGNEALMMFKEMLGARLIPTRLTFLSLMSSDSAVEVCNQLHARVIKMGYETCTSVSNAAMAMYADHGKLDAVKLLFEKLEEKDVVSWNTVIAAYAQNDHTRLATLVYMEMQRRGIVPDEYTMSTLLASSESLEVVQMFYAFVLKNGLSLMSEVVNALVSAFSKQGNIDHAYQIFCGKHSKNLITWNAIISGFLLNQRPLQALELFLLMQKLQIWPDVYTLTMVLSICASISSLRHGREVHGYIFTHGLISETSLGNGLITMYAKCGILNCAAKAFNYMIERDVVSWNAIISAFAQYGEGSKAVEYFTEMQFEIGIRPDQATFTAVLSACSHAGLVCEGIRIFNFMVNDYGFKPGVDHFSCLIDLLGRAGYLDETEELIDSKNSKVDPNVWWTLFSACAAYGNVRLGRIVAGLLLQTQKNDPSVYVMLSNIHANAGQWEDAANIRDMMKRVGVAKQPGYSWIKP*

Click here to download the sequence:
Link to NCBI Protein BLAST