Transcript Information: S_Transcript_238840.p1


Annotated TAIR IDAT5G40390.1
Annotated Gene NameRaffinose synthase family protein
Annotated Gene Symbol(s)SIP1
Annotation TypeOrtholog
Chromosome Positionchr5:16161720-16165085 | Forward length=783
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.74679340200762
Replicate 20.30955444532227
Replicate 30.25876287872399
Condition 2: 8 Hour
Replicate 10.2992082825108
Replicate 20.28535521224141
Replicate 30.43501729806084
Condition 3: 24 Hour
Replicate 10.19504360259459
Replicate 21.0117773025155
Replicate 31.5120358253067


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_238840.p1 GENE.S_Transcript_238840~~S_Transcript_238840.p1 ORF type:complete len:784 (+),score=67.20,Raffinose_syn|PF05691.8|0 S_Transcript_238840:161-2512(+)
ATGGCTCCAAGTCTAACCAAAGGAGCATTAGAAGCAATTGGCCTTATTGATGATACACCTAAACAATCATCATCATCATCAATTACTCTTCAAGGTTCAACTTTTTTTGCTAATGGCCACCCAATTTTAACCCAAGTCCCTTCTAACATCATTGCCACTCCTTGCTTTGACAAGGAAATCCACAAACCCAATAGTGCTGTCTGCTTCGTGGGGTTCCACGTGGACCAACCCGACAGCCGCCACGTCGTCCCCATCGGCAAGCTCCACGGCATCCGGTTCATGAGCATTTTCCGGTTCAAGGTCTGGTGGACCACCCACTGGACTGGCTCCCGCGGCAACGACGTCGAGCACGAGACCCAGATGCTGCTGCTGGACAAGAGCCCCGACGATGACGACGGCGGCCGTCCCTACGTCCTTCTGCTTCCCATCCTTGAGGGCCCCTTCCGGGCCTCCCTCCAGCCCGGTCCGGCCAGCGACGACAGCCTCTGCCTCTGCGTGGAGAGCGGGTCCGTTCAAGTGGCCGGGTCGTCGTTCGAGAGCTGCCTCTACATGCGGGCCGGCCCGGACCCCTTCGACCTGGCCCGGGACGCGGTGCGGGACGTCCGGACCCACCTGGGGACGTTCGAGGTCCTAGAGGAGAAGACCCCACCGAGTATAGTGGACAAGTTTGGTTGGTGCACATGGGATGCATTTTACCTCAAGGTAGACCCGAATGGAATCAAAGAAGGCGTTAAGAAGCTAACACAAGGTGGGTGCCCACCCGGGTTCGTCCTGATAGACGACGGGTGGCAGTCCATATGCCACGACTTCGACCCGATAACCCGGGAGGGCATGGACCTGACGTCACCCGGTGAACAGATGCCATGTAGGCTGGTAAAATACCAGGAGAATCACAAGTTCCGGGACTACCAAAGTGTAGAAAAAAATGGGAAAGGGTTAGGGGTGTTTGTGAGGGACTTAAAGGAGGAATTTAGGACAATAGAACATGTGTATGTGTGGCATGCATTGATGGGGTATTGGGGAGGGATAAGACCAAATGTGCCAAATATGCCAAAGTCAAGGGTGATTAGTCCTAAGTTGTCTAAGGGATTGCAGATGACTATGGAAGATTTGGCCGTTGATAAGATCGTCGAAAACGGCGTCGGATTGGTGCCGCCGGAGACGGTGGGAGAGATGTATGAGGGCCTCCATTCGTACCTTCATCAAGCTGGGATTGATGGGGTTAAAGTTGATGTTATTCATCTGTTGGAAATGCTATCGGAGGATTACGGAGGGCGGGTGGACCTAGCTAAAGCATATTATAAGGCGCTTACAGCCTCAGTGAGGAAGCATTTCAATGGAAATGGAGTAATTGCTAGCATGGAGCACTGCAATGACTTCATGCTTCTTGGTACTGAGGCTATTTGTCTTGGACGCGTTGGTGACGATTTTTGGTGCACTGATCCAAATGGAGATCCAAATGGGACATATTGGCTACAAGGTTGTCACATGGTTCATTGTGCTTACAATAGCCTATGGATGAGAAACTTCATCCACCCTGATTGGGATATGTTCCAATCCACCCACCCTTGTGCGGAGTTTCATGCTGCGTCTCGAGCCATATCCGGTGGGCCGATCTATGTGAGTGATTGTGTTGGAAAACACAACTTTGAACTTCTTAAGAAGTTGGTTTTGCCTGATGGGTCTATTATAAGGTGCCAGCATTATGCACTTCCTACTAAAGATTGCCTCTTTGAGGACCCTTTGCATGATGGCAAAACTATGCTCAAGATTTGGAACCTTAACAAGTACACAGGAGTGATTGGAGCATTCAACTGCCAAGGCGGAGGATGGTTCCCTCAAATGAGACGCAACAAAGCTGCGTCCGAGTTCTCACACCCAGTAACCTCCTTGACAAACCCCAGAGATGTGGAATGGAACAAGGGCAAGAGCCCTATTTCAATCAAAGGGGTCAAAATTTTTGCAGTTTACACATTTAAAGAAAAGAAGCTAAGGCTTTTGAAACATGACGAAAACATGGAGTTAACATTGGATTGTTTCGACTATGAGCTCATGATTGTATCGCCGGTGAAATTGTTGCCTGGAAAACTAATCCAGTTTGCACCCATTGGACTAGTAAACATGCTTAACTCCGGTGGAGCAATCGATTCCCTCGTAATGGAGGAGGAAGAAGGAATTCTTAGGGTCGGAGTAAGGGGGTGTGGTGAATTCAAGGTATTTGCATCTGAGAAGCCAAAATCTTGTAATTTTAATGGCAAGGATGTGGGATTCTCCTACAGTGATTACATGGTTAGCATTGAAGTATCATGGCCTGGTTCTTCCGGAGTATCCATGATTGAGTTTGTTTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_238840.p1 GENE.S_Transcript_238840~~S_Transcript_238840.p1 ORF type:complete len:784 (+),score=67.20,Raffinose_syn|PF05691.8|0 S_Transcript_238840:161-2512(+)
MAPSLTKGALEAIGLIDDTPKQSSSSSITLQGSTFFANGHPILTQVPSNIIATPCFDKEIHKPNSAVCFVGFHVDQPDSRHVVPIGKLHGIRFMSIFRFKVWWTTHWTGSRGNDVEHETQMLLLDKSPDDDDGGRPYVLLLPILEGPFRASLQPGPASDDSLCLCVESGSVQVAGSSFESCLYMRAGPDPFDLARDAVRDVRTHLGTFEVLEEKTPPSIVDKFGWCTWDAFYLKVDPNGIKEGVKKLTQGGCPPGFVLIDDGWQSICHDFDPITREGMDLTSPGEQMPCRLVKYQENHKFRDYQSVEKNGKGLGVFVRDLKEEFRTIEHVYVWHALMGYWGGIRPNVPNMPKSRVISPKLSKGLQMTMEDLAVDKIVENGVGLVPPETVGEMYEGLHSYLHQAGIDGVKVDVIHLLEMLSEDYGGRVDLAKAYYKALTASVRKHFNGNGVIASMEHCNDFMLLGTEAICLGRVGDDFWCTDPNGDPNGTYWLQGCHMVHCAYNSLWMRNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFELLKKLVLPDGSIIRCQHYALPTKDCLFEDPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWFPQMRRNKAASEFSHPVTSLTNPRDVEWNKGKSPISIKGVKIFAVYTFKEKKLRLLKHDENMELTLDCFDYELMIVSPVKLLPGKLIQFAPIGLVNMLNSGGAIDSLVMEEEEGILRVGVRGCGEFKVFASEKPKSCNFNGKDVGFSYSDYMVSIEVSWPGSSGVSMIEFVF*

Click here to download the sequence:
Link to NCBI Protein BLAST