Transcript Information: S_Transcript_239163.p2


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value3E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12435981885598
Replicate 20.61858288479014
Replicate 30.34472403894581
Condition 2: 8 Hour
Replicate 10.5979081397327
Replicate 20.52270674391885
Replicate 30.69724735156481
Condition 3: 24 Hour
Replicate 10.71455226371102
Replicate 20.95315095414545
Replicate 30.70716012350793


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_239163.p2 GENE.S_Transcript_239163~~S_Transcript_239163.p2 ORF type:5prime_partial len:214 (+),score=34.96,rve|PF00665.22|1.6e-10,gag_pre-integrs|PF13976.2|1.7e-08 S_Transcript_239163:2-643(+)
TCAATATCATTCTCATCCTCCCTCTGTGTGCTGCAGGCCTCTTCAATGAAGAGGCCCTTGGTTCTTGGTAAGCAGCAGGGGGGTCTCTACCTTCTACATCCCACAGAAGCATCTTCTTCTACCTCTTCAACTTCCAGTTGTACTTTTCCAATTTCAAACACAGTTCCTGTTTGTAATAACTCAGTTGTTAGCAATGTATCTGCTGAATGCTCCCTTTGGCATTCTAGACTTGGGCATTTGCCTTTGAATAAAATGAAACAATTGTCTCTCTTGCATATTGATACTGCTACAATTTCTGGTTTTCATTGTGAAGTGTGTCATCGAGCTAGGCAACACAAATTACCCTTCCCCCACAGCAATATTAAAACATCTAAGCCCTTTGAGTTAATGCATGTTGATATTTGGGGACCTTATCATCAACAAACACATGATGGCTACAAATATTTCCTTACAATTGTTGATGATTATAGCAGATGCACTTGGACTCATCTTTTAAGCTCCAAAGGCAATGCTTTCACCCTCATTAAATCCTTTGTTCATATGATTAAAACTCAATTCAGTTCTGACCTTCAGATTTTGAGGAGTGATAATGCTCTTGAACTTGGTAAAAGCCATGAAACCATCAGATTTTTTCAAGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_239163.p2 GENE.S_Transcript_239163~~S_Transcript_239163.p2 ORF type:5prime_partial len:214 (+),score=34.96,rve|PF00665.22|1.6e-10,gag_pre-integrs|PF13976.2|1.7e-08 S_Transcript_239163:2-643(+)
SISFSSSLCVLQASSMKRPLVLGKQQGGLYLLHPTEASSSTSSTSSCTFPISNTVPVCNNSVVSNVSAECSLWHSRLGHLPLNKMKQLSLLHIDTATISGFHCEVCHRARQHKLPFPHSNIKTSKPFELMHVDIWGPYHQQTHDGYKYFLTIVDDYSRCTWTHLLSSKGNAFTLIKSFVHMIKTQFSSDLQILRSDNALELGKSHETIRFFQE*

Click here to download the sequence:
Link to NCBI Protein BLAST