Transcript Information: S_Transcript_240580.p1


Annotated TAIR IDAT4G32910.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:15881364-15885210 | Forward length=716
E-Value1.6E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0106203000701
Replicate 20.4189137257756
Replicate 31.7508926661646
Condition 2: 8 Hour
Replicate 11.3497082479198
Replicate 21.274345808592
Replicate 32.0236564181944
Condition 3: 24 Hour
Replicate 10.69129378134792
Replicate 21.864743990459
Replicate 31.1174323470621


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_240580.p1 GENE.S_Transcript_240580~~S_Transcript_240580.p1 ORF type:5prime_partial len:158 (+),score=5.10,Nucleopor_Nup85|PF07575.9|2.9e-09 S_Transcript_240580:3-476(+)
GCTGAGCATCTTTCTGCAACAACTTGTAACTGGGTTGAACTTTATGTATCTCATTTTCTATACATCAGGCCATTCACTGTGGGTTTAGAAAGTATGTACAGTCTAGCTCAGAAATGCATCCAATTGAAGCCTGTGTCCCTTTCCAGTAGCCTGATGGGACTTTTAATTGGAATACTTGGAGAGAATACTGAGGTGAAACATATGTGGTTTTTTTTCTCTCTTCATCGTTGTTTTTTTCTTTTCTATGGAAGTTTACACAATGACACTCAACACAAGTATGCTTGCTCGATATGTCAGCTAACATACTCAATGCTCCTCTCTATTGATTTATTTTGGTCTCCTGAGTCCTGTCCTACTTTCTTAGGTCGTGTTAGCAGAATGCTCCAAAGCTTTTGGCCCATGGTGAGTAATCTATATATAAATCTTTCAAGTAAACAATTCCTTCAAGGGTCCTCTTTATTAAATTTAAGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_240580.p1 GENE.S_Transcript_240580~~S_Transcript_240580.p1 ORF type:5prime_partial len:158 (+),score=5.10,Nucleopor_Nup85|PF07575.9|2.9e-09 S_Transcript_240580:3-476(+)
AEHLSATTCNWVELYVSHFLYIRPFTVGLESMYSLAQKCIQLKPVSLSSSLMGLLIGILGENTEVKHMWFFFSLHRCFFLFYGSLHNDTQHKYACSICQLTYSMLLSIDLFWSPESCPTFLGRVSRMLQSFWPMVSNLYINLSSKQFLQGSSLLNLS*

Click here to download the sequence:
Link to NCBI Protein BLAST