Transcript Information: S_Transcript_240581.p1


Annotated TAIR IDAT4G32910.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:15881364-15885210 | Forward length=716
E-Value2.4E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.18228083037795
Replicate 20.45334499090784
Replicate 30.63160055080824
Condition 2: 8 Hour
Replicate 10.58425726896255
Replicate 21.0726228799869
Replicate 30.43799686859551
Condition 3: 24 Hour
Replicate 10.44886746898481
Replicate 20.4656947584181
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_240581.p1 GENE.S_Transcript_240581~~S_Transcript_240581.p1 ORF type:5prime_partial len:146 (+),score=10.39,Nucleopor_Nup85|PF07575.9|1.6e-10 S_Transcript_240581:3-440(+)
GCTGAGCATCTTTCTGCAACAACTTGTAACTGGGTTGAACTTTATGTATCTCATTTTCTATACATCAGGCCATTCACTATGGGTTTAGAAAGTATGTACAGCCTAGCTCAGAAATGCATCCAGTTGAAGCCTGTGTCCCATTCCAATAGCCTGATGGGACTTTTAATTGGAATACTTGGAGAGAGTACTGAGGTATGGTTTTATTCTCTCTCTCTTCATCGTTGTTTTTTTCTTTTCTATGGAAGTTTACACAATGACACTCAACACAAGTATGCTTGCTCGATATGTCAGCTAACATACTCAATGCTCCTCTCTATTGATTTATTTTGGTCTCCTGAGTCCTGTCCTACTTTCTTAGGTCGTGTTAGCAGAATGCTCCAAAGCTTTTGGCCCATGGATGGTCACCCATGCCATAGAGTTGTTGACAGCCGGCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_240581.p1 GENE.S_Transcript_240581~~S_Transcript_240581.p1 ORF type:5prime_partial len:146 (+),score=10.39,Nucleopor_Nup85|PF07575.9|1.6e-10 S_Transcript_240581:3-440(+)
AEHLSATTCNWVELYVSHFLYIRPFTMGLESMYSLAQKCIQLKPVSHSNSLMGLLIGILGESTEVWFYSLSLHRCFFLFYGSLHNDTQHKYACSICQLTYSMLLSIDLFWSPESCPTFLGRVSRMLQSFWPMDGHPCHRVVDSRQ*

Click here to download the sequence:
Link to NCBI Protein BLAST