Transcript Information: S_Transcript_240584.p1


Annotated TAIR IDAT4G32910.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:15881364-15885210 | Forward length=716
E-Value5.4E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.32063856909856
Replicate 20
Replicate 30.22220163956145
Condition 2: 8 Hour
Replicate 10.7707972403783
Replicate 21.6172420703417
Replicate 31.0272697640955
Condition 3: 24 Hour
Replicate 10.52638273471311
Replicate 21.0922318831975
Replicate 30.60776010614738


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_240584.p1 GENE.S_Transcript_240584~~S_Transcript_240584.p1 ORF type:5prime_partial len:83 (+),score=5.55,Nucleopor_Nup85|PF07575.9|2.7e-11 S_Transcript_240584:3-251(+)
GCTGAGCATCTTTCTGCAACAACTTGTAACTGGGTTGAACTTTATGTATCTCATTTTCTATACATCAGGCCATTCACTATGGGTTTAGAAAGTATGTACAGCCTAGCTCAGAAATGCATCCAGTTGAAGCCTGTGTCCCATTCCAATAGCCTGATGGGACTTTTAATTGGAATACTTGGAGAGAATACTGAGGTGAAACATACGTGGTTTTTTTCTCTCTCTCTTCATCGTTGTTTTTTTCTTTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_240584.p1 GENE.S_Transcript_240584~~S_Transcript_240584.p1 ORF type:5prime_partial len:83 (+),score=5.55,Nucleopor_Nup85|PF07575.9|2.7e-11 S_Transcript_240584:3-251(+)
AEHLSATTCNWVELYVSHFLYIRPFTMGLESMYSLAQKCIQLKPVSHSNSLMGLLIGILGENTEVKHTWFFSLSLHRCFFLF*

Click here to download the sequence:
Link to NCBI Protein BLAST