Transcript Information: S_Transcript_240617.p1


Annotated TAIR IDAT5G09950.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3102877-3105864 | Reverse length=995
E-Value9E-304
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.8981297042068
Replicate 20.43106693629247
Replicate 30.29482171359219
Condition 2: 8 Hour
Replicate 11.9696630488293
Replicate 21.6292110021826
Replicate 31.5144474319703
Condition 3: 24 Hour
Replicate 10.3492077289793
Replicate 20.76485332140426
Replicate 30.26879621035648


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_240617.p1 GENE.S_Transcript_240617~~S_Transcript_240617.p1 ORF type:complete len:563 (+),score=116.20,DYW_deaminase|PF14432.2|1.4e-39,PPR_2|PF13041.2|0.37,PPR_2|PF13041.2|0.0065,PPR_2|PF13041.2|0.81,PPR_2|PF13041.2|8.1e-08,PPR_2|PF13041.2|0.85,PPR_2|PF13041.2|4.2e-11,PPR_2|PF13041.2|0.55,PPR_2|PF13041.2|16,PPR_2|PF13041.2|4.4e+02,PPR|PF01535.16|0.094,PPR|PF01535.16|45,PPR|PF01535.16|0.0016,PPR|PF01535.16|8.8e-06,PPR|PF01535.16|0.0071,PPR|PF01535.16|4.9e-06,PPR|PF01535.16|0.2,PPR|PF01535.16|0.023,PPR|PF01535.16|3.6e+03,PPR|PF01535.16|3.6e+03,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|2.5e+02,PPR_1|PF12854.3|5.3e+02,PPR_1|PF12854.3|0.72,PPR_1|PF12854.3|4.1e+02,PPR_1|PF12854.3|0.0043,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|15,PPR_1|PF12854.3|0.53,PPR_1|PF12854.3|2e+02,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|93,PPR_3|PF13812.2|8,PPR_3|PF13812.2|3.3,PPR_3|PF13812.2|4.9e+02,PPR_3|PF13812.2|18,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|4.4,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|1.6e+04 S_Transcript_240617:1515-3203(+)
ATGAGGGAGGGGGCTCAAATACATGCAGAAGCACTTAAATTAGGACTTGATTCTGATGTCTCGGTTTCAAATGCTCTCCTTGCATTATATGCTGAGACTGGAAATATATCAGAATGCCAGAAACTGTTTTCTTTGATGCCAGAGCATGATCAAGTTTCATGGAATTCTATTATTGGGGCACTGGCTGACTCAGAAGTATATGCTTCAGAAGCTGTGATGTATTTTCTGGAAATGATGCGGTCAAATTGGAGGCTTAGTGGGGTCACTTTTGTAAATATTCTTTCAGCTGTGTCATCTCTTTCACTCTCTGAATTAGGTCCTCAGCTTCATGCCTTAGCATTCAAATACAGTGTCACAAGCGACCCTACAGTTGAGAATGCACTTATATCTTGCTATGGGAAGTGCGACAAGATTGAAGATTGTGAATTGATTTTTTCAAGAATGTCTGGGAGGAGGGATGAGATCAGTTGGAACTCAATGATATCTGGTTATATACATAATGAGCAATTGTCCAAAGCCATGGATCTTGTCTGGTTCATGATGCAGAATGGCTGTAGGTTAGACCACTTCATCTTTGCCACTGTTCTTAGCGCTTGCGCCTCAGTTGCTACCTTGGAGCGTGGAATGGAAGTTCATGCTTGTGAAATCAGGGCTGGTCTGGAATCTGATGTTGTGGTGGGGAGTGCAATCGTTGACATGTATGCAAAGTGTGGACGGATAGACTATGCTATGAAATTCTTTGAGCTGATGCCAGTTAAAAATGTGTATTCTTGGAATTCCATGATTTCAGGTTATGCACGACATGGGAATGCTCAGAAAGCTTTAGAAACTTCTGTGAAAATGAAGAAAGCAGGAATGCCCCCGAATCATGTTACATTTGTCGGAGTTTTATCTGCTTGTAGTCATGGTGGTATGGTGCAAGAAGGATTTAAGCATTTTGAATCTATGAGCAAAGAGCATGGATTGGCTCCTCAAATGGAGCATTTTTCGTGTATGGTGGACCTTCTCGGACGCTCTGGTCGGCTAGATAAGGTTGAAGATTTCATTAATAAAATGCCTATGGAGCCAAATGTCCTTATTTGGAGAACAGTTCTGGGGTCTTGCTGTCGTACAAATGGGCGCAACAGTGAGTTAGGTAAGCGGGCTGCTGAGATGCTTTTGCAGTTGGAACCAGACAATGCAGTCAATTATGTGCTTCTTTCTAACATGTATGCTGCTGGAGCAAATTGGGATAACATGGCGAAGGCTCGGTCTTCATTGAAGCTGGCAGCAGCAAAGAAGGAAGCAGGACGCAGTTGGGTCACTATGAAAGATGGGGTTCATGTATTTGTTGCTGGAGACAAATCACACCCCGAGAAAGAAGCAATCTATAGTAAACTTAGAGAACTCCAAATAAAGATGAGGGATGCTGGTTATGTGCCACAAACAAGCTTTGCTCTGTACGATCTAGATCTAGAGAGCAAGGAAGAACACCTGAGTTACCACAGTGAGAGACTGGCTGCTGCTTTTGTTCTTACACGCAAATCAGTATCCACTATCAGGATAATGAAAAATCTGCGTGTATGTGGTGACTGTCACTCTGCTTTCAAATATATATCGAAGATTGTTGATCGCCAAATTGTGTTACGAGACTCTAACAGATTTCATCATTTTTCTGATGGAAATTGTTCATGTGGAGATTACTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_240617.p1 GENE.S_Transcript_240617~~S_Transcript_240617.p1 ORF type:complete len:563 (+),score=116.20,DYW_deaminase|PF14432.2|1.4e-39,PPR_2|PF13041.2|0.37,PPR_2|PF13041.2|0.0065,PPR_2|PF13041.2|0.81,PPR_2|PF13041.2|8.1e-08,PPR_2|PF13041.2|0.85,PPR_2|PF13041.2|4.2e-11,PPR_2|PF13041.2|0.55,PPR_2|PF13041.2|16,PPR_2|PF13041.2|4.4e+02,PPR|PF01535.16|0.094,PPR|PF01535.16|45,PPR|PF01535.16|0.0016,PPR|PF01535.16|8.8e-06,PPR|PF01535.16|0.0071,PPR|PF01535.16|4.9e-06,PPR|PF01535.16|0.2,PPR|PF01535.16|0.023,PPR|PF01535.16|3.6e+03,PPR|PF01535.16|3.6e+03,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|2.5e+02,PPR_1|PF12854.3|5.3e+02,PPR_1|PF12854.3|0.72,PPR_1|PF12854.3|4.1e+02,PPR_1|PF12854.3|0.0043,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|15,PPR_1|PF12854.3|0.53,PPR_1|PF12854.3|2e+02,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|93,PPR_3|PF13812.2|8,PPR_3|PF13812.2|3.3,PPR_3|PF13812.2|4.9e+02,PPR_3|PF13812.2|18,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|4.4,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|1.6e+04 S_Transcript_240617:1515-3203(+)
MREGAQIHAEALKLGLDSDVSVSNALLALYAETGNISECQKLFSLMPEHDQVSWNSIIGALADSEVYASEAVMYFLEMMRSNWRLSGVTFVNILSAVSSLSLSELGPQLHALAFKYSVTSDPTVENALISCYGKCDKIEDCELIFSRMSGRRDEISWNSMISGYIHNEQLSKAMDLVWFMMQNGCRLDHFIFATVLSACASVATLERGMEVHACEIRAGLESDVVVGSAIVDMYAKCGRIDYAMKFFELMPVKNVYSWNSMISGYARHGNAQKALETSVKMKKAGMPPNHVTFVGVLSACSHGGMVQEGFKHFESMSKEHGLAPQMEHFSCMVDLLGRSGRLDKVEDFINKMPMEPNVLIWRTVLGSCCRTNGRNSELGKRAAEMLLQLEPDNAVNYVLLSNMYAAGANWDNMAKARSSLKLAAAKKEAGRSWVTMKDGVHVFVAGDKSHPEKEAIYSKLRELQIKMRDAGYVPQTSFALYDLDLESKEEHLSYHSERLAAAFVLTRKSVSTIRIMKNLRVCGDCHSAFKYISKIVDRQIVLRDSNRFHHFSDGNCSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST