Transcript Information: S_Transcript_242123.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value5E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.95902707153804
Replicate 20.19876386988752
Replicate 30.16615077552793
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.19680075216751
Replicate 20.61253544800939
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_242123.p1 GENE.S_Transcript_242123~~S_Transcript_242123.p1 ORF type:5prime_partial len:111 (+),score=11.05,gag_pre-integrs|PF13976.2|9.8e-09,gag_pre-integrs|PF13976.2|2e+03 S_Transcript_242123:3-335(+)
CATATGAGATTAGGCCACATGAGTGAGAAGGGAATCCAAATCCTCAAGAAGAAGGGTCATCTTGGAAACCATTGTACCGGTAAGGTTGATTTCTGCGAACATTGCATCTTTGGTAAGCAGAAGAAAGTCAGCTTTTCTAAAGCAGTCCACAGAACCAAAAGTACTCTGGATTACATTCATTCGGATCTTTGGGCTCCATCGAAAGTTCCTTCTAAAGGAAAATGTCATTATATGCTGACTATAATTGATGATTTCTCACGGAAAATCTGGCTTTATTTTCTCAAGCATAAGAATGAAGCGTTTTCTTTGGGCTCCATCGAAAGTTCCTTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_242123.p1 GENE.S_Transcript_242123~~S_Transcript_242123.p1 ORF type:5prime_partial len:111 (+),score=11.05,gag_pre-integrs|PF13976.2|9.8e-09,gag_pre-integrs|PF13976.2|2e+03 S_Transcript_242123:3-335(+)
HMRLGHMSEKGIQILKKKGHLGNHCTGKVDFCEHCIFGKQKKVSFSKAVHRTKSTLDYIHSDLWAPSKVPSKGKCHYMLTIIDDFSRKIWLYFLKHKNEAFSLGSIESSF*

Click here to download the sequence:
Link to NCBI Protein BLAST