Transcript Information: S_Transcript_243227.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value3E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.24857609599696
Replicate 30
Condition 3: 24 Hour
Replicate 10.12136046383663
Replicate 20
Replicate 30.42036740675194


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_243227.p1 GENE.S_Transcript_243227~~S_Transcript_243227.p1 ORF type:3prime_partial len:180 (+),score=11.92,rve|PF00665.22|8.9e-16,gag_pre-integrs|PF13976.2|1.8e-12 S_Transcript_243227:90-626(+)
ATGGCCTCAAACAAAATATTTCCATTAAAAATGCCAATTGAGAGCAAAGTTGCTCTTAATTGTATCAATGATGAATCAATATTATGGCATTTAAGATTCGGGCATCTAAATTACAAGAGTTTGAAACTCTTGAAACAAAAGGAAATGGTGATTGGTCTCCCTAACATAAATATTGAAAGAAAAATATGTGAGGGCTGCATTTATGGAAAAATCCATAGATTACCATTTACCACATCATCTTGGAGGGCCAAAGCTCCACTAGAACTTGTTCATGCAGACATATGGGGCCCATCCAAGAATCCCTCTATTGGGGGAAAAAGATATTTCTTGTTGTTTGTTGATGATTACTCTTGTATGATGTGGGTTTATTTTTTAAATAAAAAATCGGAGGCATTCTCCTTTTTACAATTCAAAGCCCTCACAGAAAAACAAAGTGGGCATCCTCTTAAAACTCTTAGAACTGATCGCGGGGGAGAATTCACAAGTAAAGAATTCCATGACTTCTGTAAAAAACATGGAATTAAAAGAGAATTAACA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_243227.p1 GENE.S_Transcript_243227~~S_Transcript_243227.p1 ORF type:3prime_partial len:180 (+),score=11.92,rve|PF00665.22|8.9e-16,gag_pre-integrs|PF13976.2|1.8e-12 S_Transcript_243227:90-626(+)
MASNKIFPLKMPIESKVALNCINDESILWHLRFGHLNYKSLKLLKQKEMVIGLPNINIERKICEGCIYGKIHRLPFTTSSWRAKAPLELVHADIWGPSKNPSIGGKRYFLLFVDDYSCMMWVYFLNKKSEAFSFLQFKALTEKQSGHPLKTLRTDRGGEFTSKEFHDFCKKHGIKRELT

Click here to download the sequence:
Link to NCBI Protein BLAST