Transcript Information: S_Transcript_24425.p1


Annotated TAIR IDAT2G42780.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:17801037-17802646 | Forward length=293
E-Value7.1E-65
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.009286596558
Replicate 219.197492212383
Replicate 317.963703977533
Condition 2: 8 Hour
Replicate 115.324739362096
Replicate 220.822283365979
Replicate 321.869505984332
Condition 3: 24 Hour
Replicate 114.657822255593
Replicate 213.539419902753
Replicate 316.596323591245


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_24425.p1 GENE.S_Transcript_24425~~S_Transcript_24425.p1 ORF type:complete len:231 (+),score=40.12,Elongin_A|PF06881.7|8.1e-28 S_Transcript_24425:794-1486(+)
ATGAGATTGGGATATATATTCTCTGACAGAAATAGAGCAGGGAAAGGGAAAGTTCCCTCTCTGGTCGATTTATGTGTTCAGACTGCCATTGATAATGTTAGGTACATTGGTGATGTTGGTGCGACTGATTCGCATCTTCTCGAGCGCATCTTACCCCATTGTACAGTTGAGCAATTGATGCATATTGAGAACGCTACATCTGATAGGGATCTGAGTCCAATTACTGATAAATTGTGGATGAAATTTTACGAGAGAAAATTTGGCGCAGAGAGTTTAAATGGAGTAATAGAGAGGATGGAAGAAAATCATGTGACATTTAAATGGCGACATTTGTATCAGGCAAAATTGAAGACCCAGGAGGAGGCTCAACAAAAGTCACTTGATCGGCTGACACAGTCATTCAAGAACCAAAATGCTCAAAAGCAAAGTCGACAAATCCAGATTTGCACAAAGGTTCCACCCTCAAAGAAACGGAGTTTTTTCGGAGGGTTTGGAGGATCAAGCAATTTCTCCAATGTGAAGAGCAATATAATGAAGAAGGCAAAAGTTGAATATTTTAACAGCACGGAAATGAAAAACCGGGTAGCTTTGAAGAAAAGTGCTGTACAGGTGCAGCGAACTAGCAGCTTGATGGCAAAGCCTCAAAGTGCACGCGGGAAGGAGACTCTCTCAAATTCTAAGCTCAGGAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_24425.p1 GENE.S_Transcript_24425~~S_Transcript_24425.p1 ORF type:complete len:231 (+),score=40.12,Elongin_A|PF06881.7|8.1e-28 S_Transcript_24425:794-1486(+)
MRLGYIFSDRNRAGKGKVPSLVDLCVQTAIDNVRYIGDVGATDSHLLERILPHCTVEQLMHIENATSDRDLSPITDKLWMKFYERKFGAESLNGVIERMEENHVTFKWRHLYQAKLKTQEEAQQKSLDRLTQSFKNQNAQKQSRQIQICTKVPPSKKRSFFGGFGGSSNFSNVKSNIMKKAKVEYFNSTEMKNRVALKKSAVQVQRTSSLMAKPQSARGKETLSNSKLRK*

Click here to download the sequence:
Link to NCBI Protein BLAST