Transcript Information: S_Transcript_245915.p4


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.16031928454928
Replicate 20.53163348331361
Replicate 30.22220163956145
Condition 2: 8 Hour
Replicate 10.25693241345943
Replicate 20.13477017252847
Replicate 30.77045232307162
Condition 3: 24 Hour
Replicate 10.13159568367828
Replicate 20.27305797079937
Replicate 30.15194002653684


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_245915.p4 GENE.S_Transcript_245915~~S_Transcript_245915.p4 ORF type:5prime_partial len:166 (+),score=20.60,UBN2_3|PF14244.2|6.9e-47,Retrotrans_gag|PF03732.13|6.9e-09,UBN2|PF14223.2|7.3e-07 S_Transcript_245915:3-500(+)
AATCCTCTCTATGTTCTAAGCTCCAATGACAATCCTGGTACATCCATTACCCATGTTGTCTTGCGAGGATCGAACTATGAAGAATGGGCCAAAGCTTTTCGTGTTTCGTTACGTGCCAAACGAAAACTTGCCTTTATTGATGGAAAACTCACAGAACCATTAGTAGACTCAAGCGAGAATGAGGACTGGTGGACCGTGAATTCTATGATCGTTTCTTGGATGTTCAACACCATCGATCCGTCCATTCGTTCTACCATTTCCTACCGTGATACTGCCAGTGAGTTGTGGGAGGATATTCGACAACGCTTCTCTGTTGGTAATGGAGTGAAAATTTATCAATTGAAGTCTGAAATTTCAGAATGTAAACAGAAAACAGGTGAAACGATAATGGATTATTATGGCAGATTGAAGAAATTGTGGGATGATGTTAATGACTATGATGCATTACCTTCTTGCTCGTGCTCTGGATGCAAGTGTGGGCTTAATGCTACCCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_245915.p4 GENE.S_Transcript_245915~~S_Transcript_245915.p4 ORF type:5prime_partial len:166 (+),score=20.60,UBN2_3|PF14244.2|6.9e-47,Retrotrans_gag|PF03732.13|6.9e-09,UBN2|PF14223.2|7.3e-07 S_Transcript_245915:3-500(+)
NPLYVLSSNDNPGTSITHVVLRGSNYEEWAKAFRVSLRAKRKLAFIDGKLTEPLVDSSENEDWWTVNSMIVSWMFNTIDPSIRSTISYRDTASELWEDIRQRFSVGNGVKIYQLKSEISECKQKTGETIMDYYGRLKKLWDDVNDYDALPSCSCSGCKCGLNATL*

Click here to download the sequence:
Link to NCBI Protein BLAST