Transcript Information: S_Transcript_246804.p1


Annotated TAIR IDAT1G09900.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:3218133-3219929 | Forward length=598
E-Value4E-58
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.58440712171849
Replicate 20.81990096328602
Replicate 30.59191213781826
Condition 2: 8 Hour
Replicate 11.8731761765049
Replicate 22.7586907951014
Replicate 32.0523704619661
Condition 3: 24 Hour
Replicate 10.70110267959677
Replicate 20.49768505150763
Replicate 30.59646726633721


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_246804.p1 GENE.S_Transcript_246804~~S_Transcript_246804.p1 ORF type:5prime_partial len:592 (+),score=92.52,PPR_2|PF13041.2|8.9e+02,PPR_2|PF13041.2|2.2e+02,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|1.5e-14,PPR_2|PF13041.2|3.4e-13,PPR_2|PF13041.2|2.4e-17,PPR_2|PF13041.2|9.1e-14,PPR_2|PF13041.2|3.2e-11,PPR_2|PF13041.2|4.7e-08,PPR_2|PF13041.2|5.5e-06,PPR_2|PF13041.2|2.3e-09,PPR_2|PF13041.2|0.002,PPR_2|PF13041.2|1.6e+02,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|6.1e+03,PPR_1|PF12854.3|1.1e-12,PPR_1|PF12854.3|3.9e-08,PPR_1|PF12854.3|3e-10,PPR_1|PF12854.3|6.2e-13,PPR_1|PF12854.3|1.9e-07,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|2.7e-07,PPR_1|PF12854.3|1e+02,PPR|PF01535.16|1.9e+02,PPR|PF01535.16|0.72,PPR|PF01535.16|0.13,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|0.00029,PPR|PF01535.16|1.8e-09,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|0.00019,PPR|PF01535.16|1.2,PPR|PF01535.16|1.1,PPR|PF01535.16|0.00062,PPR|PF01535.16|2.4e+02,PPR_3|PF13812.2|2.6e+03,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|0.8,PPR_3|PF13812.2|2.9e-07,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|0.00049,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|1.2e+04 S_Transcript_246804:2-1777(+)
ATAGATGTCCCAACTTGGGTTCCATGGCCTCCCGCCTCCACATTTCAACTGCCCACAGTTCCTGTGAAACCACAATTAGTTAAACCTCCACATCCAATTATGGCTTCTAGACATCTCATCACCCAATCTCTCTCATCAAATCCTTCCACTTCCTCATTAGTGACCTCCATAACTACAATCCTCCAATCCCTAAAGCCCCAACACTTGAAAACCCAAACCCCTGAAAACTTTCCCCCTCTTTCCCAATTCTCCTCCCACTTAAACCATGATTTGGTCATCCAAGTCATCAAGAACCAAACAAGCCCTTACCATGCTCTCCTTTTCTTCAACTGGGCTTCTAGCCATTCCCCTAACCCCACCAATTATTACCCTTCATTCCCCTGTTACATTGCCATGGTTGATCTTTTTCTTTCTCATGGCTTATTTACATCAGCCACCCAGCTCCTAGAATCCCATAGAAAACTCTCTGATTTCATGGTGGGTAAGTTGATCAAAGCCTATGGGAATTGTGGTAACATTAGGGGGGCTATTGATTGGTTTCATAGAGCTAAAATAACCCAAAATGATTGCATCTTTTCTTGCAATGCTTTGTTAGGTGTGTTGGTTAAGGCCAATAGGTTCACTTTGGCTTGTGCAATATTTGATCAGATTGTTAAGGAAGGTGTAACAAAGCCCAATGTTGCTACATACACTACCATGATTAGTGGGTATTGTAAAAAAGGCATGATGATGAATGCACAGAAGGTGTTTGATGAAATGCCATTAAGGCCGAATAGGTTTACTTACAATATTATGGTTGGTGGGTTTTGTACGAAGGGTATGATGGTGAATGCACGACAGGTTGTGGATCGAATGATTTTGAGTAGGGAATGTTTGCCTGACTTGCTAACTTACACGACGCTGATTGATGGGTATTGCAAGAGTGGTGAGATGGAGGTAGCATTGAGTTGTTTGGGTGAGATGATCGAGCAAGGGTGTGAGCCGAATGTGGTGACTTATAATGCAGTTGTTAATGGGTTTTGCTTGTTTGGTAAGGTTGATGAGGCTAAGAGAATGATGACAAAGATGAGGTTGAATGGTGTGAAAGATGATATTATCACTCACACAAGCTTGCTTAAGGGGTTTTGTGTTATTGGGAGATTAGACGAGGCTTTTAAACATTTAAGGGAGATGATTAGCTTAGGAATAAAACCTGATGTGAAAGCATATGGTGTAGTTTTGAATGAGTGTTGTCAATTAGGGAAGTCGAATGAGGCGATTGCTCTCTTAAGGGAGATGAAATTGAGAGGCATTGATCCAAGTGTTTCTAGTTTCAATGCCGTGTTTAGAGTACTTGTAGAAAAAGACGAACTAGATGTAGCTGTACTTCTTTTGAAAAGGATGCCTGATATGGGTCGTGCTCCGAATTTCTTGTCATATTTTACTGTGATATCAAGCCTTTGTAAGTCTGAAGGAAGGGTAGAAGAAGTCGAGCAACTCATACAATGCATGCTCCACAAAGGTCACAAGCCTGACACTTCGTTGTACAGTTGCTTGATCAAGATGTATTGCAAATCTGGAGATCTTGATATGGCCATTCAAGTCTTGTACGATGCTTTGAGCACAGGGCATGTGATTAGACTTGACAGCTTTGAAGAAATTATAGAGAAATTATGTGCGAAAGGAAGAATTCTGGAGGCTGAACACCATTTCAACAAATTGTCAACAAGTTGTCAAGTTATGCAACTAGATGATTACAAAAGGGTTTTGGACGAGCTAATATGTAAATTTCAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_246804.p1 GENE.S_Transcript_246804~~S_Transcript_246804.p1 ORF type:5prime_partial len:592 (+),score=92.52,PPR_2|PF13041.2|8.9e+02,PPR_2|PF13041.2|2.2e+02,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|1.5e-14,PPR_2|PF13041.2|3.4e-13,PPR_2|PF13041.2|2.4e-17,PPR_2|PF13041.2|9.1e-14,PPR_2|PF13041.2|3.2e-11,PPR_2|PF13041.2|4.7e-08,PPR_2|PF13041.2|5.5e-06,PPR_2|PF13041.2|2.3e-09,PPR_2|PF13041.2|0.002,PPR_2|PF13041.2|1.6e+02,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|6.1e+03,PPR_1|PF12854.3|1.1e-12,PPR_1|PF12854.3|3.9e-08,PPR_1|PF12854.3|3e-10,PPR_1|PF12854.3|6.2e-13,PPR_1|PF12854.3|1.9e-07,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|2.7e-07,PPR_1|PF12854.3|1e+02,PPR|PF01535.16|1.9e+02,PPR|PF01535.16|0.72,PPR|PF01535.16|0.13,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|0.00029,PPR|PF01535.16|1.8e-09,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|0.00019,PPR|PF01535.16|1.2,PPR|PF01535.16|1.1,PPR|PF01535.16|0.00062,PPR|PF01535.16|2.4e+02,PPR_3|PF13812.2|2.6e+03,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|0.8,PPR_3|PF13812.2|2.9e-07,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|0.00049,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|1.2e+04 S_Transcript_246804:2-1777(+)
IDVPTWVPWPPASTFQLPTVPVKPQLVKPPHPIMASRHLITQSLSSNPSTSSLVTSITTILQSLKPQHLKTQTPENFPPLSQFSSHLNHDLVIQVIKNQTSPYHALLFFNWASSHSPNPTNYYPSFPCYIAMVDLFLSHGLFTSATQLLESHRKLSDFMVGKLIKAYGNCGNIRGAIDWFHRAKITQNDCIFSCNALLGVLVKANRFTLACAIFDQIVKEGVTKPNVATYTTMISGYCKKGMMMNAQKVFDEMPLRPNRFTYNIMVGGFCTKGMMVNARQVVDRMILSRECLPDLLTYTTLIDGYCKSGEMEVALSCLGEMIEQGCEPNVVTYNAVVNGFCLFGKVDEAKRMMTKMRLNGVKDDIITHTSLLKGFCVIGRLDEAFKHLREMISLGIKPDVKAYGVVLNECCQLGKSNEAIALLREMKLRGIDPSVSSFNAVFRVLVEKDELDVAVLLLKRMPDMGRAPNFLSYFTVISSLCKSEGRVEEVEQLIQCMLHKGHKPDTSLYSCLIKMYCKSGDLDMAIQVLYDALSTGHVIRLDSFEEIIEKLCAKGRILEAEHHFNKLSTSCQVMQLDDYKRVLDELICKFQ*

Click here to download the sequence:
Link to NCBI Protein BLAST