Transcript Information: S_Transcript_247564.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.24415597463468
Replicate 20
Replicate 30.16919941361101
Condition 2: 8 Hour
Replicate 10.48911445681498
Replicate 20.30786947669349
Replicate 30.39111646981617
Condition 3: 24 Hour
Replicate 10.40082355028613
Replicate 20.10396243842361
Replicate 30.11569745139962


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_247564.p1 GENE.S_Transcript_247564~~S_Transcript_247564.p1 ORF type:3prime_partial len:218 (+),score=52.12,UBN2_3|PF14244.2|4e-43,Retrotrans_gag|PF03732.13|6.2e-11 S_Transcript_247564:430-1080(+)
ATGTCTTCTGATTCCAACACTGATTGTGGTTCAACAGTTATAGATGCTTCGAATCCTCTGTATCTACATCATGCTGATCATCCAGGATTGGTACTTGTTTCTAGTTGTTTTGATGGAAAAGGCTATGGAGCTTGGAAAAGGGCTTTGATGATTGCTTTGTCAGCCAAAAATAAAATCTGCATGATAGATGGCAGTTCTGTTAGGCCTGCTGCTGATTCTTCTAACCTGAGGCATTGGGAGAGATGCAATGATATGGTGATTTCATGGCTGTTAAATTCTTTAAGCAAGGATATTGCTGAGAGTGTGCTTTATAACACAACTGCTAGAGAAATATGGAAGGAATTGGAAGATAGATTTGGGAAGTGCAATGGAGCACAGTTGTATCATTTGCAGTCAGATGTCAACAACTTGTCTCAAGGAACCTCTGATATTACCACATATTACACAAGAGCAAAGAGGCTTTGGGATGAGCTTGCTACTGTTGACATTTTACCAGTTTGTACATGTGGAGCAGCACAACAGTTTACCAAAAGAGAACAAGATAGTAGGTTAATTCAGTTTCTCATGGGACTGAATGATGACTATAAGACAGCAAGGGGAAATATACTCATGATGCAACCTTTGCCTAGCCTTGCAGTGGCCTATTCCCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_247564.p1 GENE.S_Transcript_247564~~S_Transcript_247564.p1 ORF type:3prime_partial len:218 (+),score=52.12,UBN2_3|PF14244.2|4e-43,Retrotrans_gag|PF03732.13|6.2e-11 S_Transcript_247564:430-1080(+)
MSSDSNTDCGSTVIDASNPLYLHHADHPGLVLVSSCFDGKGYGAWKRALMIALSAKNKICMIDGSSVRPAADSSNLRHWERCNDMVISWLLNSLSKDIAESVLYNTTAREIWKELEDRFGKCNGAQLYHLQSDVNNLSQGTSDITTYYTRAKRLWDELATVDILPVCTCGAAQQFTKREQDSRLIQFLMGLNDDYKTARGNILMMQPLPSLAVAYSL

Click here to download the sequence:
Link to NCBI Protein BLAST