Transcript Information: S_Transcript_247565.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.076525875865563
Condition 2: 8 Hour
Replicate 11.2388193545222
Replicate 20.37131698987098
Replicate 31.7689500087121
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_247565.p1 GENE.S_Transcript_247565~~S_Transcript_247565.p1 ORF type:complete len:241 (+),score=54.57,UBN2_3|PF14244.2|6.3e-35,Retrotrans_gag|PF03732.13|5.3e-07 S_Transcript_247565:528-1250(+)
ATGATTGCTCTGTCTGCAAAGAATAAAATTGGCCTGATAGATGGAACCTTAGTTAAACCAGCAGCTAACTCTTCTGAACTCAGACAATGGGAGAGATGCAATGATATGGTGATTTCCTGGATATTGAACTCCTTGAGTAAGGAGATTGCTGAAAGTGTTCTGTATAATGCTACTGCAAGGGAAATTTGGATTGAATTGGAGGAAAGATTTGGTAAATGTAATGCTGCACAGTTGTATCACTTGCAATATGATGTTAACAATTTGTCACAAGATGCTTCTGATATAGCTACTTACTATACCAAAGCAAAGAGGCTATGGGATGAACTTAGTACAGTTGATGCTCTTCCAATCTGTACATGTGGTGCTGCCCAACAATTTGCTAAGAAAGAGCAAGACAGGAGGCTTATTCAGTTTCTCATGGGACTGAATAATGACTATAAGACAGCTAGAGGTAATATCTTGAGGATGCAGCCTTTGCCTAGCCTTGCAGTGGCTTATTCACTTCTTACACAAGATCAAGAGCAAAAGGACACTCACTCTTCTCTGAAATCCTTCACTGAATCTGCTGCTATGTTCTCTGGATCTCAAAAAGGGCACTATAACTCTCAGAATTTTAATCAAAATCATGGTAATGGAAATCAACCTTACAAAGGTAACAAGAATGACAGTGGTGCTAAGTCCAAATTCTTTTGTATCTTTTGCAAAAGGAATGGTCATACATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_247565.p1 GENE.S_Transcript_247565~~S_Transcript_247565.p1 ORF type:complete len:241 (+),score=54.57,UBN2_3|PF14244.2|6.3e-35,Retrotrans_gag|PF03732.13|5.3e-07 S_Transcript_247565:528-1250(+)
MIALSAKNKIGLIDGTLVKPAANSSELRQWERCNDMVISWILNSLSKEIAESVLYNATAREIWIELEERFGKCNAAQLYHLQYDVNNLSQDASDIATYYTKAKRLWDELSTVDALPICTCGAAQQFAKKEQDRRLIQFLMGLNNDYKTARGNILRMQPLPSLAVAYSLLTQDQEQKDTHSSLKSFTESAAMFSGSQKGHYNSQNFNQNHGNGNQPYKGNKNDSGAKSKFFCIFCKRNGHT*

Click here to download the sequence:
Link to NCBI Protein BLAST