Transcript Information: S_Transcript_2488.p1


Annotated TAIR IDAT5G40390.1
Annotated Gene NameRaffinose synthase family protein
Annotated Gene Symbol(s)SIP1
Annotation TypeOrtholog
Chromosome Positionchr5:16161720-16165085 | Forward length=783
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 146.487672234343
Replicate 268.191511969966
Replicate 366.530637457592
Condition 2: 8 Hour
Replicate 126.315858895183
Replicate 225.633217878766
Replicate 327.557956430481
Condition 3: 24 Hour
Replicate 1102.93912488854
Replicate 276.946828305885
Replicate 381.89101118234


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_2488.p1 GENE.S_Transcript_2488~~S_Transcript_2488.p1 ORF type:complete len:782 (+),score=137.69,Raffinose_syn|PF05691.8|0 S_Transcript_2488:296-2641(+)
ATGGCACCAAGTTTGAGCAAGGCAAATTTCGACATGTCGGATGTTGCTGCGAACCATGTTGGCAGGCCATTGGTGACTTTGGAGGGGTCGAACTTCTTTGTCAACGATCACGTGATCCTATCCGACGTCCCTCCCAACATCACCGCGAAGCCGGGCCCATCCGGGCTCTTCGTCGGGTTCAACGCCCCGAATCCCGAGGCCCGACATGAGGTGCCCGTGGGCCAGCTCAAGGGCATCCCCTTCATGAGCATCTTCAGGTTCAAGGTCTGGTGGACCACCCACTGGGTCGGGTCCAACGGGCGGGACCTGGAGCATGAGACCCAGATCCTGGTCCTAGACAAATCCGATGATTGCGGGCCGGGTTCGGGCCGTCCATATGTGACGGTGATCCCCATTGTTGAGGGCCCGTTCCGGGCCTCTCTGCAGCCGGGCCGGGTTGACGATTATGTAGACGTGTGTTTGGAGAGTGGGTCCACGAAAGTGGTGGAGGACTCGTTTGGGGCTGTGCTATATATGCATGCCGGGCCCGACCCGTTTAGGCTGGTGAAGGATGCCATGAGGGTGGTCCAGGCCCATTTAGGGACATTCAAGCACTTGGAGGAGAAATCACCACCAGGTATAGTGGACAAGTTTGGTTGGTGCACATGGGATGCATTTTACCTCAAGGTGGACCCACAGGGTGTTTGGGATGGGGTCCGGGGCCTCGTCGAAAACGGGGCCCCACCCGGACTTGTGCTCATTGACGACGGGTGGCAGTCCATTTGTCATGATGACGACCCAATCGATGACCAAGAAGGGATGAACCGGACATCTGCTGGTGAGCAGATGCCCTGCAGGCTCATCAAGTATGAGGAGAACTATAAGTTTAGGCACTACACAAGCTCAAAGAAATTGGGCCCAAACGGGCAGCCCAATAAGGGAATGGGTGCCTTTGTAAGGGACCTAAAAGAGGAGTTCAAGAGTGTTGAGCATGTCTATGTTTGGCATGCCTTTATGGGCTACTGGGGTGGGGTTCGCCCGGGTGTTTCGGGCCTTCCTGAGGCCCAGGTCATCAGCCCGAAGCTCTCACCTGGCTTGGAGATGACTATGGAGGATTTGGCTGTTGATAAGATTGTTAATAATGGTGTTGGCTTGGTCTCGCCTGAGAAGGCTCATGAACTGTATGAAGGTTTGCATTCTCACTTAGAGGCTAGTGGCATTGATGGGGTCAAAGTCGATGTTATCCATTTGTTGGAGATGATGGCAGAGGACTATGGAGGGAGAGTAGAGCTTGCGAAGGCATACTACAAGGCGATCACAGAGTCCGTTAGGAAGCATTTCAAAGGAAATGGGGTGATTGCTAGCATGGAACAATGCAATGACTTCATGCTTCTTGGTACTGAGACTGTCAGCCTTGGTCGTGTTGGGGATGACTTTTGGCCTACTGATCCATATGGTGATATTAATGGCACATACTGGCTCCAAGGATGTCATATGGTGCATTGTGCCTACAATAGTTTGTGGACGGGCAACTTCATACACCCTGACTGGGACATGTTCCAATCAACCCATCCTTGTGCCGAGTTTCATGCTGCTTCTCGAGCCATCTCTGGCGGTCCAATCTATGTCAGTGATGCTGTTGGCAAGCACAACTTCCCGTTGCTCAAGAAGCTTGTTTTGCCTGATGGCTCGATCCTTCGATGTGATTACTATGCCCTTCCTACTAGGGATTGCCTCTTTGTGGATCCTCTGCATGATGGCAAAACAATGCTCAAAATTTGGAACCTCAACAAGTATACTGGAGTATTGGGAGTGTTCAACTGTCAAGGAGGAGGATGGAGCCGAGAACTCCGAAGAAACCAATGCTTCTCTGAGTATTCCAAGCCAGTTACATGCAGTACAGGCCCAAAAGATGTCGAGTGGAAGAATGGTCGCAAGCCATTCCCTATTGAAGGGGTTGAACAATTTGCCATGTACCTTTCCAAGGAAAAGAAGCTAGTCCTCTCCAAGCCATCAGACGCCATTGAAATGTCGCTGGAACCCTTTAGTTACGAGCTCATCATAGTCTCACCGGTGACAGTTTTGCCCTGGGAATCAGTCCATTTTGCTCCTATAGGGCTGGTGAATATGCTCAACTCCGGGGGGGCTATTCAGTCCTTTGACATCTCTGATGACAATGAGGAGAAAATGGTTCAGGTTGGAGTCAAGGGGGCTGGAGAACTGAGGGTTTTCGCGTCAGAAAAACCGAAGGCTTGCAGATTAAATGGGGAAGATATGAGGTTTGAGTATGATGACAGTATGGTTATAATTCAAGTGCCTTGGAATGATGGTGCTGGTGGTTTATCAGCAGTTGAGTACTTGTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_2488.p1 GENE.S_Transcript_2488~~S_Transcript_2488.p1 ORF type:complete len:782 (+),score=137.69,Raffinose_syn|PF05691.8|0 S_Transcript_2488:296-2641(+)
MAPSLSKANFDMSDVAANHVGRPLVTLEGSNFFVNDHVILSDVPPNITAKPGPSGLFVGFNAPNPEARHEVPVGQLKGIPFMSIFRFKVWWTTHWVGSNGRDLEHETQILVLDKSDDCGPGSGRPYVTVIPIVEGPFRASLQPGRVDDYVDVCLESGSTKVVEDSFGAVLYMHAGPDPFRLVKDAMRVVQAHLGTFKHLEEKSPPGIVDKFGWCTWDAFYLKVDPQGVWDGVRGLVENGAPPGLVLIDDGWQSICHDDDPIDDQEGMNRTSAGEQMPCRLIKYEENYKFRHYTSSKKLGPNGQPNKGMGAFVRDLKEEFKSVEHVYVWHAFMGYWGGVRPGVSGLPEAQVISPKLSPGLEMTMEDLAVDKIVNNGVGLVSPEKAHELYEGLHSHLEASGIDGVKVDVIHLLEMMAEDYGGRVELAKAYYKAITESVRKHFKGNGVIASMEQCNDFMLLGTETVSLGRVGDDFWPTDPYGDINGTYWLQGCHMVHCAYNSLWTGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDAVGKHNFPLLKKLVLPDGSILRCDYYALPTRDCLFVDPLHDGKTMLKIWNLNKYTGVLGVFNCQGGGWSRELRRNQCFSEYSKPVTCSTGPKDVEWKNGRKPFPIEGVEQFAMYLSKEKKLVLSKPSDAIEMSLEPFSYELIIVSPVTVLPWESVHFAPIGLVNMLNSGGAIQSFDISDDNEEKMVQVGVKGAGELRVFASEKPKACRLNGEDMRFEYDDSMVIIQVPWNDGAGGLSAVEYLF*

Click here to download the sequence:
Link to NCBI Protein BLAST